SMTL ID : 6amz.1

Crystal structure of a domain swapped 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Acinetobacter baumannii

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-trimer

Ligands

3 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 7 residues within 4Å: Chain A: S.219, T.220, Y.256 Chain B: S.211, M.212, V.242, P.243 4 PLIP interactions: 1 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.242 Hydrogen bonds: A:S.219 Water bridges: A:G.217, A:G.217 MRD.3: 7 residues within 4Å: Chain B: S.219, T.220, Y.256 Chain C: S.211, M.212, V.242, P.243 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:S.219 Water bridges: B:G.217, B:G.217 Hydrophobic interactions: C:V.242 MRD.5: 7 residues within 4Å: Chain A: S.211, M.212, V.242, P.243 Chain C: S.219, T.220, Y.256 4 PLIP interactions: 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:S.219 Water bridges: C:G.217, C:G.217 Hydrophobic interactions: A:V.242

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: C.86 Chain B: C.86 Chain C: C.86 Ligands: CA.4, CA.6 No protein-ligand interaction detected (PLIP) CA.4: 5 residues within 4Å: Chain A: C.86 Chain B: C.86 Chain C: C.86 Ligands: CA.2, CA.6 No protein-ligand interaction detected (PLIP) CA.6: 5 residues within 4Å: Chain A: C.86 Chain B: C.86 Chain C: C.86 Ligands: CA.2, CA.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of a domain swapped 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase from Acinetobacter baumannii. To Be Published

Release Date

2017-08-23

Peptides

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase

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