SMTL ID : 6any.1

Structure of BmVAL-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 2 residues within 4Å: Chain A: N.36, Q.117 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Q.117

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 4 residues within 4Å: Chain A: N.122, T.124, K.174, L.176 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.174

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: C.195, A.196, K.197, K.198, R.203 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.197, A:K.198 Water bridges: A:K.194, A:K.194, A:K.198, A:K.198, A:S.199, A:R.203 Salt bridges: A:K.198, A:R.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Darwiche, R. et al., Crystal structure of Brugia malayi venom allergen-like protein-1 (BmVAL-1), a vaccine candidate for lymphatic filariasis. Int. J. Parasitol. (2018)

Release Date

2018-03-28

Peptides

Bm4233, isoform b: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bm4233, isoform b