SMTL ID : 6aop.1

Crystal structure of the A/Brisbane/10/2007 (H3N2) influenza virus hemagglutinin L194P mutant apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 5 residues within 4Å: Chain A: N.159 Chain E: S.213, P.215, R.216, N.219 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.216 NAG-NAG-BMA-MAN.2: 4 residues within 4Å: Chain A: N.32, T.34, T.312 Chain B: L.52 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.8: 5 residues within 4Å: Chain A: S.213, P.215, R.216, N.219 Chain C: N.159 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.216 NAG-NAG-BMA-MAN.9: 4 residues within 4Å: Chain C: N.32, T.34, T.312 Chain D: L.52 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA-MAN.15: 5 residues within 4Å: Chain C: S.213, P.215, R.216, N.219 Chain E: N.159 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.216 NAG-NAG-BMA-MAN.16: 4 residues within 4Å: Chain E: N.32, T.34, T.312 Chain F: L.52 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 5 residues within 4Å: Chain A: S.39, N.279, V.291, N.292 Chain B: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 5 residues within 4Å: Chain C: S.39, N.279, V.291, N.292 Chain D: E.69 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 5 residues within 4Å: Chain E: S.39, N.279, V.291, N.292 Chain F: E.69 No protein-ligand interaction detected (PLIP)

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: N.16, T.18, T.31, N.32 No protein-ligand interaction detected (PLIP) NAG.5: 3 residues within 4Å: Chain A: E.56, N.57, Y.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.57 NAG.6: 2 residues within 4Å: Chain A: Q.126, N.127 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.127 NAG.7: 4 residues within 4Å: Chain B: A.147, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.154, B:T.156 NAG.11: 4 residues within 4Å: Chain C: N.16, T.18, T.31, N.32 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain C: E.56, N.57, Y.88 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.57 NAG.13: 2 residues within 4Å: Chain C: Q.126, N.127 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.127 NAG.14: 4 residues within 4Å: Chain D: A.147, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.154, D:T.156 NAG.18: 4 residues within 4Å: Chain E: N.16, T.18, T.31, N.32 No protein-ligand interaction detected (PLIP) NAG.19: 3 residues within 4Å: Chain E: E.56, N.57, Y.88 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.57 NAG.20: 2 residues within 4Å: Chain E: Q.126, N.127 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.127 NAG.21: 4 residues within 4Å: Chain F: A.147, S.151, N.154, T.156 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.154, F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N.C. et al., A structural explanation for the low effectiveness of the seasonal influenza H3N2 vaccine. PLoS Pathog. (2017)

Release Date

2017-10-18

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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