SMTL ID : 6aq7.1

Structure of POM6 FAB fragment complexed with mouse PrPc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Y.45, N.49, R.52, N.93, T.95, D.98 Chain C: T.31, Y.36, W.96 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain A Water bridges: C:T.31, A:N.49 Hydrogen bonds: A:Y.45, A:R.52, A:R.52, A:N.93 GOL.3: 6 residues within 4Å: Chain C: S.28, S.30, T.31, S.32, T.71, K.72 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.28, C:S.28, C:T.71

1 x TCE: 3,3',3''-phosphanetriyltripropanoic acid(Non-covalent)

TCE.2: 3 residues within 4Å: Chain B: E.45, W.46, N.60 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baral, P.K. et al., Structural characterization of POM6 Fab and mouse prion protein complex identifies key regions for prions conformational conversion. FEBS J. (2018)

Release Date

2018-04-04

Peptides

Major prion protein: A
POM6 FAB Heavy CHAIN: B
POM6 FAB light CHAIN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Major prion protein

POM6 FAB Heavy CHAIN

POM6 FAB light CHAIN