SMTL ID : 6aqf.1

Crystal structure of A2AAR-BRIL in complex with the antagonist ZM241385 produced from Pichia pastoris

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

monomer

Ligands

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.1: 12 residues within 4Å: Chain A: L.95, F.178, E.179, M.187, W.352, L.355, H.356, N.359, H.370, L.373, M.376, I.380 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.95, A:W.352, A:L.355, A:L.373 Hydrogen bonds: A:N.359, A:N.359 Water bridges: A:F.178 Salt bridges: A:E.179 pi-Stacking: A:F.178, A:F.178

3 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 7 residues within 4Å: Chain A: P.354, I.357, I.358, F.361, C.368, S.369, L.375 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:P.354, A:P.354, A:I.357, A:I.357, A:I.358, A:F.361, A:L.375 Hydrogen bonds: A:S.369 CLR.3: 8 residues within 4Å: Chain A: F.192, F.193, L.197, I.357, C.360, F.361, F.364, C.365 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.192, A:F.193, A:L.197, A:I.357, A:F.361, A:F.361, A:F.361, A:F.364, A:F.364 CLR.4: 10 residues within 4Å: Chain A: L.68, F.72, A.82, A.83, G.86, F.89, I.90 Ligands: OLC.13, OLC.15, OLC.16 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.68, A:F.72, A:F.72, A:A.82, A:A.83, A:F.89, A:I.90, A:I.90 Hydrogen bonds: A:A.83

1 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.5: 4 residues within 4Å: Chain A: Y.189, F.193, A.194 Ligands: OLC.14 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.189, A:F.193, A:A.194

7 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.6: 7 residues within 4Å: Chain A: P.71, I.74, T.75, T.78, F.80 Ligands: OLA.7, OLC.13 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:P.71, A:I.74, A:F.80 Hydrogen bonds: A:T.78, A:T.78 OLA.7: 2 residues within 4Å: Ligands: OLA.6, OLC.13 No protein-ligand interaction detected (PLIP) OLA.8: 2 residues within 4Å: Chain A: W.374, L.378 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.374, A:W.374, A:W.374, A:L.378 OLA.9: 8 residues within 4Å: Chain A: G.15, S.16, V.18, V.22, L.373, Y.377, L.378, V.381 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.18, A:V.22, A:L.373, A:Y.377, A:Y.377, A:L.378, A:V.381 OLA.10: 5 residues within 4Å: Chain A: I.13, S.17, I.20, T.21, L.24 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.20, A:L.24 OLA.11: 6 residues within 4Å: Chain A: F.54, A.107, I.110, D.111, V.126, I.134 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.107, A:I.110, A:I.134 OLA.12: 3 residues within 4Å: Chain A: V.388, F.392, Y.396 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.392, A:F.392, A:Y.396

4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.13: 7 residues within 4Å: Chain A: F.72, T.75, F.80, C.81 Ligands: CLR.4, OLA.6, OLA.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.72, A:F.80 Hydrogen bonds: A:C.81 OLC.14: 2 residues within 4Å: Chain A: Y.189 Ligands: OLB.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.189 OLC.15: 1 residues within 4Å: Ligands: CLR.4 No protein-ligand interaction detected (PLIP) OLC.16: 2 residues within 4Å: Chain A: F.89 Ligands: CLR.4 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eddy, M.T. et al., Allosteric Coupling of Drug Binding and Intracellular Signaling in the A2A Adenosine Receptor. Cell (2018)

Release Date

2018-01-10

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a