- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x COA: COENZYME A(Non-covalent)
COA.1: 19 residues within 4Å:- Chain A: C.93, L.153, M.162, Y.188, N.228, L.229, N.230, K.233, L.234, I.237, A.250, P.251, S.254, P.255, L.256, F.295, A.325, F.326, H.355
11 PLIP interactions:11 interactions with chain A- Hydrophobic interactions: A:A.250, A:L.256
- Hydrogen bonds: A:Y.188, A:N.230, A:K.233, A:S.254, A:S.254, A:L.256
- Water bridges: A:M.162, A:Y.188
- Salt bridges: A:K.233
COA.6: 20 residues within 4Å:- Chain B: C.93, L.153, M.162, Y.188, N.228, L.229, N.230, K.233, L.234, I.237, F.241, A.250, P.251, S.254, L.256, F.295, A.325, F.326, H.355
- Chain C: K.138
12 PLIP interactions:11 interactions with chain B, 1 interactions with chain C- Hydrophobic interactions: B:L.153, B:F.241, B:L.256
- Hydrogen bonds: B:Y.188, B:N.230, B:S.254, B:S.254, B:S.254
- Water bridges: B:K.233, B:L.256
- Salt bridges: B:K.233, C:K.138
COA.16: 20 residues within 4Å:- Chain D: C.93, L.153, M.162, Y.188, N.228, L.229, N.230, K.233, L.234, I.237, F.241, A.250, P.251, S.254, P.255, L.256, F.295, A.325, F.326, H.355
13 PLIP interactions:13 interactions with chain D- Hydrophobic interactions: D:L.153, D:F.241, D:A.250, D:L.256
- Hydrogen bonds: D:Y.188, D:N.230, D:K.233, D:S.254, D:S.254, D:L.256
- Water bridges: D:M.162, D:Y.188
- Salt bridges: D:K.233
- 12 x K: POTASSIUM ION(Non-covalent)
K.2: 5 residues within 4Å:- Chain A: Y.188, A.250, P.251, S.253, V.351
5 PLIP interactions:4 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:Y.188, A:P.251, A:S.253, A:V.351, H2O.6
K.3: 3 residues within 4Å:- Chain A: L.42, V.45, L.48
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:L.42, A:V.45, A:L.48, H2O.7, H2O.12
K.4: 3 residues within 4Å:- Chain A: D.201, E.202, I.204
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:E.202, A:I.204, H2O.12, H2O.14, H2O.14
K.7: 6 residues within 4Å:- Chain B: Y.188, E.225, A.250, P.251, S.253, V.351
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:Y.188, B:P.251, B:S.253, B:V.351
K.8: 3 residues within 4Å:- Chain B: D.201, E.202, I.204
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.201, B:E.202, B:I.204, H2O.32
K.9: 3 residues within 4Å:- Chain B: L.42, V.45, L.48
4 PLIP interactions:3 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:L.42, B:V.45, B:L.48, H2O.29
K.11: 5 residues within 4Å:- Chain C: Y.188, A.250, P.251, S.253, V.351
5 PLIP interactions:4 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:Y.188, C:P.251, C:S.253, C:V.351, H2O.48
K.12: 3 residues within 4Å:- Chain C: D.201, E.202, I.204
5 PLIP interactions:3 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:D.201, C:E.202, C:I.204, H2O.58, H2O.58
K.13: 3 residues within 4Å:- Chain C: L.42, V.45, L.48
5 PLIP interactions:2 interactions with chain C, 3 Ligand-Water interactions- Metal complexes: C:L.42, C:V.45, H2O.51, H2O.55, H2O.56
K.17: 5 residues within 4Å:- Chain D: Y.188, A.250, P.251, S.253, V.351
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:Y.188, D:P.251, D:S.253, D:V.351, H2O.77
K.18: 3 residues within 4Å:- Chain D: D.201, E.202, I.204
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:D.201, D:E.202, D:I.204, H2O.88, H2O.89
K.19: 3 residues within 4Å:- Chain D: L.42, V.45, L.48
5 PLIP interactions:3 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:L.42, D:V.45, D:L.48, H2O.81, H2O.85
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.5: 4 residues within 4Å:- Chain A: N.386, G.388, G.390
- Chain B: R.72
Ligand excluded by PLIPCL.10: 5 residues within 4Å:- Chain A: R.72
- Chain B: N.386, G.388, G.389, G.390
Ligand excluded by PLIPCL.14: 5 residues within 4Å:- Chain C: N.386, G.388, G.389, G.390
- Chain D: R.72
Ligand excluded by PLIPCL.20: 5 residues within 4Å:- Chain C: R.72
- Chain D: N.386, G.388, G.389, G.390
Ligand excluded by PLIP- 1 x ACO: ACETYL COENZYME *A(Covalent)
ACO.15: 20 residues within 4Å:- Chain C: C.93, L.153, M.162, Y.188, N.228, L.229, N.230, K.233, L.234, I.237, A.250, P.251, S.254, P.255, L.256, F.295, A.325, F.326, H.355, G.387
11 PLIP interactions:11 interactions with chain C- Hydrophobic interactions: C:L.153, C:A.250, C:L.256
- Hydrogen bonds: C:Y.188, C:N.230, C:S.254, C:S.254, C:S.254, C:L.256
- Water bridges: C:Y.188
- Salt bridges: C:K.233
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marshall, A.C. et al., Structure of Aspergillus fumigatus Cytosolic Thiolase: Trapped Tetrahedral Reaction Intermediates and Activation by Monovalent Cations. Acs Catalysis (2018)
- Release Date
- 2018-05-30
- Peptides
- Acetyl-CoA acetyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 3 x COA: COENZYME A(Non-covalent)
- 12 x K: POTASSIUM ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x ACO: ACETYL COENZYME *A(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marshall, A.C. et al., Structure of Aspergillus fumigatus Cytosolic Thiolase: Trapped Tetrahedral Reaction Intermediates and Activation by Monovalent Cations. Acs Catalysis (2018)
- Release Date
- 2018-05-30
- Peptides
- Acetyl-CoA acetyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D