SMTL ID : 6arh.1

Crystal structure of Human NAL at a resolution of 1.6 Angstrom

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

8 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: A.32, F.65, G.68, T.69, T.70, Y.161, K.191 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.69, A:T.70, A:T.70, A:T.70 Water bridges: A:G.68 Salt bridges: A:K.191 ACT.2: 5 residues within 4Å: Chain A: G.280, V.281, L.303 Chain D: L.134, W.137 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:V.281 Water bridges: A:S.282 Hydrophobic interactions: D:L.134 ACT.3: 7 residues within 4Å: Chain B: A.32, F.65, G.68, T.69, T.70, Y.161, K.191 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:A.32 Hydrogen bonds: B:T.69, B:T.70, B:T.70, B:Y.161, B:Y.161 Water bridges: B:G.68, B:K.191 Salt bridges: B:K.191 ACT.4: 7 residues within 4Å: Chain C: A.32, F.65, G.68, T.69, T.70, Y.161, K.191 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:A.32 Hydrogen bonds: C:T.69, C:T.69, C:T.70, C:Y.161, C:Y.161 Water bridges: C:G.68 Salt bridges: C:K.191 ACT.5: 6 residues within 4Å: Chain B: L.134, K.135, W.137 Chain C: G.280, V.281, L.303 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:L.134 Hydrogen bonds: B:W.137, C:V.281 Water bridges: C:S.282 ACT.6: 5 residues within 4Å: Chain B: G.280, V.281, L.303 Chain C: L.134, W.137 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:V.281 Water bridges: B:S.282 Hydrophobic interactions: C:L.134 ACT.7: 7 residues within 4Å: Chain D: A.32, F.65, G.68, T.69, T.70, Y.161, K.191 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:A.32 Hydrogen bonds: D:T.69, D:T.70, D:T.70 Water bridges: D:G.68, D:K.191 Salt bridges: D:K.191 ACT.8: 5 residues within 4Å: Chain A: L.134, W.137 Chain D: G.280, V.281, L.303 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:V.281, A:W.137 Water bridges: D:S.282 Hydrophobic interactions: A:L.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pearce, F.G. et al., Crystal structure of Human NAL at a resolution of 1.6 Angstrom. To Be Published

Release Date

2018-08-22

Peptides

N-acetylneuraminate lyase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

N-acetylneuraminate lyase