SMTL ID : 6arq.1

Crystal structure of CD96 (D1) bound to CD155/necl-5 (D1-3)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.88 Å

Oligo State

hetero-1-1-mer

Ligands

3 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 4 residues within 4Å: Chain B: R.140, N.163, S.165, L.180 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.140, B:R.140, B:S.165 NAG-FUC.2: 4 residues within 4Å: Chain B: H.44, N.95, D.111, W.113 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:W.113 NAG-FUC.3: 1 residues within 4Å: Chain B: N.212 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: D.21, N.23, H.85 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.21 NAG.5: 4 residues within 4Å: Chain B: Y.25, V.70, N.80, S.82 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:Y.25 Hydrogen bonds: B:N.80, B:S.82 NAG.6: 2 residues within 4Å: Chain B: N.288, Q.297 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deuss, F.A. et al., Structural Basis for CD96 Immune Receptor Recognition of Nectin-like Protein-5, CD155. Structure (2019)

Release Date

2018-11-21

Peptides

T-cell surface protein tactile: A
Poliovirus receptor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

T-cell surface protein tactile

Poliovirus receptor

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