SMTL ID : 6as6.1

Crystal structure of Mycobacterium tuberculosis malate synthase in complex with 3-Prop-6-Me-phenyldiketoacid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: E.434, D.462 Ligands: BSV.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.434, A:D.462, H2O.2, H2O.6 MG.3: 1 residues within 4Å: Chain A: H.235 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.235, H2O.2, H2O.7, H2O.16, H2O.30

1 x BSV: (2Z)-4-(5-cyclopropyl-2-methylphenyl)-2-hydroxy-4-oxobut-2-enoic acid(Non-covalent)

BSV.2: 15 residues within 4Å: Chain A: V.118, S.275, R.339, M.432, E.434, G.459, F.460, L.461, D.462, M.515, W.541, M.631, D.633, A.635 Ligands: MG.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.461, A:W.541 Hydrogen bonds: A:R.339, A:R.339, A:L.461, A:D.462 Water bridges: A:K.399, A:T.458, A:F.460

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 7 residues within 4Å: Chain A: Q.61, D.65, H.469, M.472, A.703, Q.704, Q.705 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.469, A:Q.705 Water bridges: A:N.707

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ellenbarger, J.F. et al., Anion-pi Interactions in Computer-Aided Drug Design: Modeling the Inhibition of Malate Synthase by Phenyl-Diketo Acids. J Chem Inf Model (2018)

Release Date

2018-08-29

Peptides

Malate synthase G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Malate synthase G

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