SMTL ID : 6as9.1

Filamentous Assembly of Green Fluorescent Protein Supported by a C-terminal fusion of 18-residues, viewed in space group P212121 form 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-pentamer

Ligands

10 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 3 residues within 4Å: Chain A: K.99, V.174, L.176 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.174, A:L.176 Water bridges: A:R.166, A:V.174 Salt bridges: A:K.99 ACT.2: 7 residues within 4Å: Chain A: K.52, L.53, V.55, P.56, W.57, H.137, D.214 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.53, A:W.57 Water bridges: A:H.137 Salt bridges: A:K.52, A:H.137 ACT.5: 3 residues within 4Å: Chain B: K.99, V.174, L.176 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.174, B:L.176 Water bridges: B:R.166, B:V.174 Salt bridges: B:K.99 ACT.6: 7 residues within 4Å: Chain B: K.52, L.53, V.55, P.56, W.57, H.137, D.214 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:L.53, B:W.57 Water bridges: B:H.137 Salt bridges: B:K.52, B:H.137 ACT.9: 3 residues within 4Å: Chain C: K.99, V.174, L.176 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:V.174, C:L.176 Water bridges: C:R.166, C:V.174 Salt bridges: C:K.99 ACT.10: 7 residues within 4Å: Chain C: K.52, L.53, V.55, P.56, W.57, H.137, D.214 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:L.53, C:W.57 Water bridges: C:H.137 Salt bridges: C:K.52, C:H.137 ACT.13: 3 residues within 4Å: Chain D: K.99, V.174, L.176 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:V.174, D:L.176 Water bridges: D:R.166, D:V.174 Salt bridges: D:K.99 ACT.14: 7 residues within 4Å: Chain D: K.52, L.53, V.55, P.56, W.57, H.137, D.214 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:L.53, D:W.57 Water bridges: D:H.137 Salt bridges: D:K.52, D:H.137 ACT.17: 3 residues within 4Å: Chain E: K.99, V.174, L.176 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:V.174, E:L.176 Water bridges: E:R.166, E:V.174 Salt bridges: E:K.99 ACT.18: 7 residues within 4Å: Chain E: K.52, L.53, V.55, P.56, W.57, H.137, D.214 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:L.53, E:W.57 Water bridges: E:H.137 Salt bridges: E:K.52, E:H.137

10 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 6 residues within 4Å: Chain A: D.208, P.209, N.210 Chain E: H.229, G.230, M.231 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.208, A:N.210, A:N.210 MPD.4: 6 residues within 4Å: Chain A: E.93, R.94, T.95, K.160, Y.180, Q.182 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.93, A:Y.180 Hydrogen bonds: A:T.95, A:T.95, A:T.95, A:Q.182 MPD.7: 6 residues within 4Å: Chain B: D.208, P.209, N.210 Chain D: H.229, G.230, M.231 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.208, B:N.210, B:N.210 MPD.8: 6 residues within 4Å: Chain B: E.93, R.94, T.95, K.160, Y.180, Q.182 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:E.93, B:Y.180 Hydrogen bonds: B:T.95, B:T.95, B:T.95, B:Q.182 MPD.11: 3 residues within 4Å: Chain C: D.208, P.209, N.210 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.208, C:N.210, C:N.210 MPD.12: 6 residues within 4Å: Chain C: E.93, R.94, T.95, K.160, Y.180, Q.182 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:E.93, C:Y.180 Hydrogen bonds: C:T.95, C:T.95, C:T.95, C:Q.182 MPD.15: 6 residues within 4Å: Chain A: H.229, G.230, M.231 Chain D: D.208, P.209, N.210 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.208, D:N.210, D:N.210 MPD.16: 6 residues within 4Å: Chain D: E.93, R.94, T.95, K.160, Y.180, Q.182 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:E.93, D:Y.180 Hydrogen bonds: D:T.95, D:T.95, D:Q.182 MPD.19: 6 residues within 4Å: Chain C: H.229, G.230, M.231 Chain E: D.208, P.209, N.210 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:D.208, E:N.210, E:N.210 MPD.20: 6 residues within 4Å: Chain E: E.93, R.94, T.95, K.160, Y.180, Q.182 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:E.93, E:Y.180 Hydrogen bonds: E:T.95, E:T.95, E:Q.182

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McPartland, L. et al., Atomic insights into the genesis of cellular filaments by globular proteins. Nat. Struct. Mol. Biol. (2018)

Release Date

2018-05-30

Peptides

Green fluorescent protein: ABCDE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

Green fluorescent protein

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