SMTL ID : 6asd.1

Zinc finger region of human TET1 in complex with CpG DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

17 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: G.10 Chain B: C.2 Ligand excluded by PLIP UNX.2: 2 residues within 4Å: Chain A: C.6, G.7 Ligand excluded by PLIP UNX.3: 4 residues within 4Å: Chain A: C.6 Chain C: Y.23, N.26, S.30 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain B: G.8, T.9 Ligands: UNX.6 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain B: C.3, A.4 Chain C: Q.32, I.33 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain B: T.9 Ligands: UNX.4 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain B: C.2, C.3 Ligand excluded by PLIP UNX.8: 4 residues within 4Å: Chain B: A.4, C.5 Chain C: R.5 Ligands: UNX.15 Ligand excluded by PLIP UNX.9: 4 residues within 4Å: Chain B: C.5 Chain C: R.3, K.4 Ligands: UNX.15 Ligand excluded by PLIP UNX.12: 3 residues within 4Å: Chain B: C.6 Chain C: Q.32, K.38 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain C: R.27, S.30 Ligand excluded by PLIP UNX.14: 5 residues within 4Å: Chain C: R.5, P.11, C.12, Q.14, R.37 Ligand excluded by PLIP UNX.15: 4 residues within 4Å: Chain C: K.4, R.5 Ligands: UNX.8, UNX.9 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain A: G.11 Chain C: K.2, K.4 Ligand excluded by PLIP UNX.17: 3 residues within 4Å: Chain C: C.21, T.22, K.35 Ligand excluded by PLIP UNX.18: 1 residues within 4Å: Chain C: K.4 Ligand excluded by PLIP UNX.19: 1 residues within 4Å: Chain C: R.3 Ligand excluded by PLIP

2 x ZN: ZINC ION(Non-covalent)

ZN.10: 5 residues within 4Å: Chain C: C.6, G.7, C.9, C.12, C.39 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.6, C:C.9, C:C.12, C:C.39 ZN.11: 6 residues within 4Å: Chain C: C.18, G.19, C.21, C.24, C.34, K.35 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.18, C:C.21, C:C.24, C:C.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, C. et al., DNA Sequence Recognition of Human CXXC Domains and Their Structural Determinants. Structure (2018)

Release Date

2017-10-18

Peptides

Methylcytosine dioxygenase TET1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
C

Methylcytosine dioxygenase TET1