SMTL ID : 6asi.1

E. coli phosphoenolpyruvate carboxykinase G209S mutant bound to methanesulfonate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 25 residues within 4Å: Chain A: K.213, H.232, L.249, S.250, G.251, T.252, G.253, K.254, T.255, T.256, L.257, D.269, K.288, I.290, E.297, R.333, T.441, R.449, I.450, S.451, I.452, T.455 Ligands: MG.2, MN.3, 03S.4 27 PLIP interactions: 27 interactions with chain A Hydrogen bonds: A:S.250, A:G.251, A:T.252, A:T.252, A:G.253, A:K.254, A:T.255, A:T.256, A:K.288, A:E.297, A:R.449, A:R.449, A:T.455 Water bridges: A:K.213, A:K.213, A:T.256, A:T.256, A:T.256, A:K.288, A:E.297, A:R.333, A:R.333, A:R.333 Salt bridges: A:K.254, A:K.254, A:R.333 pi-Cation interactions: A:R.449

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: K.254, T.255, D.268, Y.286, R.333 Ligands: ATP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.255, H2O.1, H2O.1, H2O.3

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.3: 5 residues within 4Å: Chain A: K.213, H.232, K.254, D.269 Ligands: ATP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.232, A:D.269, H2O.2, H2O.5

1 x 03S: methanesulfonic acid(Non-covalent)

03S.4: 12 residues within 4Å: Chain A: G.64, R.65, Y.207, S.209, K.212, K.213, S.250, Y.286, N.331, R.333, F.413 Ligands: ATP.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.209 Water bridges: A:K.213, A:K.213, A:K.213, A:R.333 Salt bridges: A:R.65, A:K.213, A:R.333

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, H.Y.H. et al., Structural Control of Nonnative Ligand Binding in Engineered Mutants of Phosphoenolpyruvate Carboxykinase. Biochemistry (2018)

Release Date

2018-08-29

Peptides

Phosphoenolpyruvate carboxykinase (ATP): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoenolpyruvate carboxykinase (ATP)