SMTL ID : 6asv.1

E. coli PRPP Synthetase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

homo-hexamer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: D.190, G.192, G.193, D.240, D.241 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.190, A:D.240, A:D.241 Water bridges: A:R.196 PO4.2: 7 residues within 4Å: Chain A: I.243, D.244, T.245, G.246, G.247, T.248, L.249 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.244, A:T.245, A:T.245, A:G.246, A:T.248, A:T.248, A:T.248, A:L.249 PO4.4: 6 residues within 4Å: Chain B: H.151, D.190, G.192, G.193, D.240, D.241 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.190, B:D.190 Salt bridges: B:H.151 PO4.5: 8 residues within 4Å: Chain B: M.242, I.243, D.244, T.245, G.246, G.247, T.248, L.249 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.244, B:D.244, B:T.245, B:G.246, B:G.247, B:T.248, B:L.249 PO4.7: 6 residues within 4Å: Chain C: H.151, D.190, G.192, G.193, D.240, D.241 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.151, C:D.240 PO4.8: 7 residues within 4Å: Chain C: M.242, I.243, D.244, T.245, G.246, T.248, L.249 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:D.244, C:D.244, C:G.246, C:G.247, C:T.248, C:T.248, C:L.249 PO4.9: 5 residues within 4Å: Chain D: D.190, G.192, G.193, D.240, D.241 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.190, D:D.240, D:D.241 Water bridges: D:R.196 PO4.10: 7 residues within 4Å: Chain D: I.243, D.244, T.245, G.246, G.247, T.248, L.249 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:D.244, D:T.245, D:G.246, D:T.248, D:T.248, D:L.249 PO4.12: 6 residues within 4Å: Chain E: H.151, D.190, G.192, G.193, D.240, D.241 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:D.190, E:D.190 Salt bridges: E:H.151 PO4.13: 8 residues within 4Å: Chain E: M.242, I.243, D.244, T.245, G.246, G.247, T.248, L.249 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:D.244, E:D.244, E:T.245, E:G.246, E:G.247, E:T.248, E:L.249 PO4.15: 6 residues within 4Å: Chain F: H.151, D.190, G.192, G.193, D.240, D.241 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:H.151, F:D.240 PO4.16: 7 residues within 4Å: Chain F: M.242, I.243, D.244, T.245, G.246, T.248, L.249 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:D.244, F:D.244, F:G.246, F:G.247, F:T.248, F:T.248, F:T.248, F:L.249

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: R.69 Chain B: R.125 Chain C: S.328, I.329 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: R.125 Chain B: R.69 Chain D: S.328, I.329 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain D: R.69 Chain E: R.125 Chain F: S.328, I.329 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain A: S.328, I.329 Chain D: R.125 Chain E: R.69 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, W. et al., Crystal structure of E. coli PRPP synthetase. BMC Struct. Biol. (2019)

Release Date

2019-01-23

Peptides

Ribose-phosphate pyrophosphokinase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Ribose-phosphate pyrophosphokinase