SMTL ID : 6att.1

39S Fab bound to HER2 ecd

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.77 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: N.46, R.70, A.110 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.110 Hydrogen bonds: A:A.110, A:A.110 NAG-NAG.2: 4 residues within 4Å: Chain A: C.230, C.233, N.237, C.242 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: D.163, T.164, N.165 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.163, A:T.164, A:T.164, A:N.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oganesyan, V. et al., Structural insights into the mechanism of action of a biparatopic anti-HER2 antibody. J. Biol. Chem. (2018)

Release Date

2018-04-25

Peptides

Receptor tyrosine-protein kinase erbB-2: A
Antibody 39S Fab heavy chain: B
Antibody 39S Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Receptor tyrosine-protein kinase erbB-2

Antibody 39S Fab heavy chain

Antibody 39S Fab light chain