SMTL ID : 6au3.1

Crystal structure of SETDB1 Tudor domain with aryl triazole fragments

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x BWM: N-{[2-(3,5-dimethyl-4H-1,2,4-triazol-4-yl)phenyl]methyl}acetamide(Non-covalent)

BWM.1: 11 residues within 4Å: Chain A: F.107, G.111, A.113, C.140, F.143, I.144, W.198, I.199, Y.200, S.203, R.205 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.107, A:A.113, A:F.143, A:F.143, A:F.143, A:I.144 Hydrogen bonds: A:G.111, A:Y.200, A:S.203, A:R.205

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: W.173, W.174, K.175, D.192 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.175 SO4.3: 5 residues within 4Å: Chain A: K.40, L.52, L.53, S.54, H.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.54 Water bridges: A:S.54, A:S.54 Salt bridges: A:H.57 SO4.4: 2 residues within 4Å: Chain A: H.25, K.26 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.26 Water bridges: A:K.26, A:N.47 Salt bridges: A:H.25 SO4.5: 3 residues within 4Å: Chain A: R.14, K.26, D.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.61 Salt bridges: A:R.14, A:K.26

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 4 residues within 4Å: Chain A: Y.70, S.73, P.127, T.131 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.73

7 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.7: 3 residues within 4Å: Chain A: S.114, Y.115, L.185 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain A: K.39, Y.41, R.126 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain A: L.159, K.160, V.181 No protein-ligand interaction detected (PLIP) UNX.10: 2 residues within 4Å: Chain A: D.67, L.69 No protein-ligand interaction detected (PLIP) UNX.11: 3 residues within 4Å: Chain A: K.78, S.119, E.120 No protein-ligand interaction detected (PLIP) UNX.12: 2 residues within 4Å: Chain A: T.117, S.119 No protein-ligand interaction detected (PLIP) UNX.13: 3 residues within 4Å: Chain A: H.63, K.78, Y.122 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

MADER, P. et al., Crystal structure of SETDB1 Tudor domain with aryl triazole fragments. to be published

Release Date

2017-09-27

Peptides

Histone-lysine N-methyltransferase SETDB1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase SETDB1

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