SMTL ID : 6av0.1

Structure of human neuronal nitric oxide synthase R354A/G357D mutant heme domain in complex with 3-(2-(6-Amino-4-methylpyridin-2-yl)ethyl)-5-(3-(methylamino)propyl)benzonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: W.113, A.116, R.118, C.119, V.120, G.121, L.128, S.161, F.288, S.289, G.290, W.291, M.293, E.296, W.382, F.408, Y.410 Ligands: H4B.2, BYV.4 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:W.113, A:W.113, A:W.113, A:A.116, A:R.118, A:L.128, A:F.288, A:F.288, A:F.288, A:F.288, A:W.291, A:E.296, A:W.382, A:W.382, A:F.408, A:F.408 Water bridges: A:R.300 pi-Stacking: A:W.113 Metal complexes: A:C.119 HEM.6: 21 residues within 4Å: Chain B: W.113, A.116, R.118, C.119, V.120, G.121, L.128, S.161, M.274, F.288, S.289, G.290, W.291, M.293, E.296, V.353, W.382, F.408, Y.410 Ligands: BYV.5, H4B.7 23 PLIP interactions: 23 interactions with chain B, Hydrophobic interactions: B:W.113, B:W.113, B:A.116, B:R.118, B:V.120, B:L.128, B:F.288, B:F.288, B:F.288, B:F.288, B:W.291, B:E.296, B:V.353, B:F.408, B:F.408, B:F.408 Hydrogen bonds: B:Y.410 Water bridges: B:E.296, B:E.296, B:R.300, B:R.300 pi-Stacking: B:W.113 Metal complexes: B:C.119

2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2: 11 residues within 4Å: Chain A: S.38, M.40, R.300, V.381, W.382 Chain B: W.380, F.395, H.396, Q.397, E.398 Ligands: HEM.1 14 PLIP interactions: 12 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:R.300, A:V.381, A:W.382 Water bridges: A:S.38, A:R.300, A:R.300, A:R.300, A:W.382, B:H.396 pi-Stacking: A:W.382, A:W.382 pi-Cation interactions: A:W.382, A:W.382 Hydrophobic interactions: B:E.398 H4B.7: 11 residues within 4Å: Chain A: W.380, F.395, H.396, Q.397, E.398 Chain B: S.38, M.40, R.300, V.381, W.382 Ligands: HEM.6 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.300, B:V.381, B:W.382 Water bridges: B:S.38, B:R.300, B:R.300, B:R.300, B:W.382, A:H.396 pi-Stacking: B:W.382, B:W.382 pi-Cation interactions: B:W.382 Hydrophobic interactions: A:E.398

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 5 residues within 4Å: Chain A: C.30, C.35 Chain B: C.30, C.35, M.36 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:C.30, A:C.35, B:C.30, B:C.35

2 x BYV: 3-[2-(6-amino-4-methylpyridin-2-yl)ethyl]-5-[3-(methylamino)propyl]benzonitrile(Non-covalent)

BYV.4: 17 residues within 4Å: Chain A: M.40, Q.182, R.185, W.265, Y.266, P.269, V.271, F.288, S.289, G.290, W.291, Y.292, M.293, E.296, D.301, R.307 Ligands: HEM.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:P.269, A:V.271, A:F.288 Hydrogen bonds: A:R.185, A:M.293, A:E.296, A:R.307, A:R.307 Water bridges: A:Y.292 BYV.5: 16 residues within 4Å: Chain B: M.40, Q.182, R.185, W.265, Y.266, P.269, V.271, F.288, G.290, W.291, Y.292, M.293, E.296, D.301, R.307 Ligands: HEM.6 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:P.269, B:V.271, B:F.288 Hydrogen bonds: B:R.185, B:Y.266, B:M.293, B:E.296, B:R.307, B:R.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Do, H.T. et al., Improvement of Cell Permeability of Human Neuronal Nitric Oxide Synthase Inhibitors Using Potent and Selective 2-Aminopyridine-Based Scaffolds with a Fluorobenzene Linker. J. Med. Chem. (2017)

Release Date

2018-07-11

Peptides

Nitric oxide synthase, brain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nitric oxide synthase, brain

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