SMTL ID : 6av5.1

Structure of human neuronal nitric oxide synthase R354A/G356D mutant heme domain in complex with 6-(2-(5-Fluoro-3'-((methylamino)methyl)-[1,1'-biphenyl]-3-yl)ethyl)-4-methylpyridin-2-amine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 19 residues within 4Å: Chain A: W.113, A.116, R.118, C.119, V.120, G.121, L.128, S.161, F.288, S.289, G.290, W.291, M.293, E.296, W.382, F.408, Y.410 Ligands: H4B.2, W82.3 19 PLIP interactions: 19 interactions with chain A, Hydrophobic interactions: A:W.113, A:W.113, A:W.113, A:A.116, A:R.118, A:L.128, A:F.288, A:F.288, A:F.288, A:F.288, A:W.291, A:E.296, A:W.382, A:F.408, A:F.408 Water bridges: A:E.296, A:R.300 pi-Stacking: A:W.113 Metal complexes: A:C.119 HEM.5: 19 residues within 4Å: Chain B: W.113, A.116, R.118, C.119, V.120, G.121, S.161, F.288, S.289, G.290, W.291, M.293, E.296, V.353, W.382, F.408, Y.410 Ligands: H4B.6, W82.7 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:W.113, B:W.113, B:W.113, B:A.116, B:R.118, B:V.120, B:F.288, B:F.288, B:F.288, B:W.291, B:W.291, B:E.296, B:V.353, B:W.382, B:F.408, B:F.408 Hydrogen bonds: B:Y.410 pi-Stacking: B:W.113 Metal complexes: B:C.119

2 x H4B: 5,6,7,8-TETRAHYDROBIOPTERIN(Non-covalent)

H4B.2: 12 residues within 4Å: Chain A: S.38, M.40, R.300, V.381, W.382 Chain B: W.380, F.395, H.396, Q.397, E.398 Ligands: HEM.1, W82.3 12 PLIP interactions: 11 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.300, A:V.381, A:W.382 Water bridges: A:S.38, A:R.300, A:R.300, A:W.382 pi-Stacking: A:W.382, A:W.382 pi-Cation interactions: A:W.382, A:W.382 Hydrophobic interactions: B:E.398 H4B.6: 12 residues within 4Å: Chain A: W.380, F.395, H.396, Q.397, E.398 Chain B: S.38, M.40, R.300, V.381, W.382 Ligands: HEM.5, W82.7 10 PLIP interactions: 2 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:E.398 Water bridges: A:H.396, B:W.382 Hydrogen bonds: B:R.300, B:R.300, B:V.381, B:W.382 pi-Stacking: B:W.382, B:W.382 pi-Cation interactions: B:W.382

2 x W82: 6-(2-{5-fluoro-3'-[(methylamino)methyl][1,1'-biphenyl]-3-yl}ethyl)-4-methylpyridin-2-amine(Non-covalent)

W82.3: 18 residues within 4Å: Chain A: M.40, Q.182, I.184, R.185, Y.266, P.269, V.271, F.288, S.289, G.290, W.291, Y.292, M.293, E.296, R.307, W.382 Ligands: HEM.1, H4B.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.182, A:Q.182, A:P.269, A:P.269, A:F.288 Hydrogen bonds: A:M.293, A:E.296 Halogen bonds: A:Y.266 W82.7: 17 residues within 4Å: Chain B: M.40, Q.182, I.184, R.185, Y.266, P.269, V.271, F.288, G.290, W.291, Y.292, M.293, E.296, R.307, W.382 Ligands: HEM.5, H4B.6 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:Q.182, B:Q.182, B:P.269, B:V.271, B:F.288 Hydrogen bonds: B:M.293, B:E.296 Halogen bonds: B:Y.266

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain A: C.30, C.35 Chain B: C.30, C.35, M.36 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Metal complexes: B:C.30, B:C.35, A:C.30, A:C.35

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Do, H.T. et al., Improvement of Cell Permeability of Human Neuronal Nitric Oxide Synthase Inhibitors Using Potent and Selective 2-Aminopyridine-Based Scaffolds with a Fluorobenzene Linker. J. Med. Chem. (2017)

Release Date

2018-07-11

Peptides

Nitric oxide synthase, brain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nitric oxide synthase, brain

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