SMTL ID : 6avs.1

Complex structure of JMJD5 and Symmetric Monomethyl-Arginine (MMA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.141, D.143, H.220 Ligands: NMM.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.141, A:D.143, A:H.220, NMM.2

1 x NMM: (2S)-2-amino-5-[(N-methylcarbamimidoyl)amino]pentanoic acid(Non-covalent)

NMM.2: 11 residues within 4Å: Chain A: E.58, Y.63, Y.92, A.94, Q.95, W.130, S.138, H.141, D.143, W.234 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.63, A:W.130 Hydrogen bonds: A:Y.63, A:Q.95 Salt bridges: A:E.58, A:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, H. et al., Specific Recognition of Arginine Methylated Histone Tails by JMJD5 and JMJD7. Sci Rep (2018)

Release Date

2018-02-28

Peptides

Lysine-specific demethylase 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lysine-specific demethylase 8