SMTL ID : 6awj.1 (1 other biounit)

Staphylococcus aureus Type II pantothenate kinase in complex with ADP and pantothenate analog Deoxy-MeO-N5Pan with pantothenate present in reaction

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: G.8, G.9, T.10, L.11, K.13, L.28, V.97, G.98, T.99, G.121, G.122, Q.125, Y.137, G.224, S.225, S.226 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:G.9, A:T.10, A:T.10, A:T.10, A:L.11, A:T.99, A:T.99, A:G.121, A:Q.125, A:S.225, A:S.226 Water bridges: A:N.96, A:G.100 Salt bridges: A:K.13, A:K.13 pi-Stacking: A:Y.137, A:Y.137 ADP.4: 16 residues within 4Å: Chain B: G.8, G.9, T.10, L.11, K.13, L.28, G.98, T.99, G.121, G.122, Q.125, Y.137, G.224, S.225, S.226, H.228 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:G.9, B:T.10, B:T.10, B:T.10, B:L.11, B:L.11, B:T.99, B:G.121, B:Q.125, B:S.225, B:S.226 Water bridges: B:K.13, B:K.13, B:G.98, B:G.100 Salt bridges: B:K.13, B:K.13 pi-Stacking: B:Y.137, B:Y.137

2 x N7G: (2R)-2-hydroxy-N-{3-[(5-methoxypentyl)amino]-3-oxopropyl}-3,3-dimethylbutanamide(Non-covalent)

N7G.2: 16 residues within 4Å: Chain A: V.156, I.167, D.170, L.171, T.172, A.173, E.202, Y.240 Chain B: E.70, F.71, G.100, T.101, S.102, R.113, G.116, I.117 12 PLIP interactions: 5 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:F.71, A:V.156, A:I.167, A:E.202 Hydrogen bonds: B:G.100, B:R.113, B:R.113, A:T.172, A:T.172, A:A.173 Water bridges: B:G.100, A:R.149 N7G.3: 16 residues within 4Å: Chain A: E.70, F.71, G.100, T.101, S.102, R.113, G.116, I.117 Chain B: V.156, I.167, D.170, L.171, T.172, A.173, E.202, Y.240 12 PLIP interactions: 4 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:F.71, B:V.156, B:I.167, B:L.171, B:E.202, B:Y.240 Hydrogen bonds: A:G.100, A:R.113, B:T.172, B:T.172, B:A.173 Water bridges: A:G.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Structure-based identification of uncompetitive inhibitors for Staphylococcus aureus pantothenate kinase. To Be Published

Release Date

2018-09-12

Peptides

Type II pantothenate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Type II pantothenate kinase

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