SMTL ID : 6axk.1

Crystal structure of Fab311 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 5 residues within 4Å: Chain A: S.161, S.164, N.205, K.214, D.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.164, A:S.164 Salt bridges: A:D.216 MES.3: 8 residues within 4Å: Chain A: S.138, T.139, S.140 Chain B: P.119, S.120, V.121, V.208, K.210 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.121 Salt bridges: B:K.210 MES.4: 11 residues within 4Å: Chain A: Q.39, G.42, K.43, G.44 Chain B: P.8, D.87, Y.89, G.105, G.106, T.107, K.108 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.43 Water bridges: B:Y.89

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.2: 5 residues within 4Å: Chain A: G.55, S.56, R.57, N.58, F.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.58 Water bridges: A:N.58 1PE.5: 9 residues within 4Å: Chain A: Q.39, V.93, Y.95, Q.113 Chain B: Q.40, L.41, P.42, G.43, T.44 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Y.95, B:G.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Oyen, D. et al., Structural basis for antibody recognition of the NANP repeats in Plasmodium falciparum circumsporozoite protein. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-11-22

Peptides

Fab311 heavy chain: A
Fab311 light chain: B
ACE-ASN-PRO-ASN-ALA-ASN-PRO-ASN-ALA-ASN-PRO-ASN: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

Fab311 heavy chain

Fab311 light chain

ACE-ASN-PRO-ASN-ALA-ASN-PRO-ASN-ALA-ASN-PRO-ASN

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