SMTL ID : 6axs.1

Structure of the V11I/T58A/P122A mutant of the HIV-1 capsid protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

60 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: E.35, K.170, R.173 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: M.144 Chain E: R.162, Q.219 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: I.37, P.38 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: S.146, T.148 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: L.172, R.173 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: N.21 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: I.124 Ligands: CL.14 Ligand excluded by PLIP IOD.9: 3 residues within 4Å: Chain A: R.18 Chain F: P.17, N.21 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: T.148, I.153, R.167 Ligand excluded by PLIP IOD.17: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.18: 3 residues within 4Å: Chain B: E.35, K.170, R.173 Ligand excluded by PLIP IOD.19: 3 residues within 4Å: Chain B: M.144 Chain F: R.162, Q.219 Ligand excluded by PLIP IOD.20: 2 residues within 4Å: Chain B: I.37, P.38 Ligand excluded by PLIP IOD.21: 2 residues within 4Å: Chain B: S.146, T.148 Ligand excluded by PLIP IOD.22: 2 residues within 4Å: Chain B: L.172, R.173 Ligand excluded by PLIP IOD.23: 1 residues within 4Å: Chain B: N.21 Ligand excluded by PLIP IOD.24: 2 residues within 4Å: Chain B: I.124 Ligands: CL.30 Ligand excluded by PLIP IOD.25: 3 residues within 4Å: Chain B: R.18 Chain D: P.17, N.21 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain B: T.148, I.153, R.167 Ligand excluded by PLIP IOD.33: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.34: 3 residues within 4Å: Chain C: E.35, K.170, R.173 Ligand excluded by PLIP IOD.35: 3 residues within 4Å: Chain C: M.144 Chain D: R.162, Q.219 Ligand excluded by PLIP IOD.36: 2 residues within 4Å: Chain C: I.37, P.38 Ligand excluded by PLIP IOD.37: 2 residues within 4Å: Chain C: S.146, T.148 Ligand excluded by PLIP IOD.38: 2 residues within 4Å: Chain C: L.172, R.173 Ligand excluded by PLIP IOD.39: 1 residues within 4Å: Chain C: N.21 Ligand excluded by PLIP IOD.40: 2 residues within 4Å: Chain C: I.124 Ligands: CL.46 Ligand excluded by PLIP IOD.41: 3 residues within 4Å: Chain C: R.18 Chain E: P.17, N.21 Ligand excluded by PLIP IOD.42: 3 residues within 4Å: Chain C: T.148, I.153, R.167 Ligand excluded by PLIP IOD.49: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.50: 3 residues within 4Å: Chain D: E.35, K.170, R.173 Ligand excluded by PLIP IOD.51: 3 residues within 4Å: Chain B: R.162, Q.219 Chain D: M.144 Ligand excluded by PLIP IOD.52: 2 residues within 4Å: Chain D: I.37, P.38 Ligand excluded by PLIP IOD.53: 2 residues within 4Å: Chain D: S.146, T.148 Ligand excluded by PLIP IOD.54: 2 residues within 4Å: Chain D: L.172, R.173 Ligand excluded by PLIP IOD.55: 1 residues within 4Å: Chain D: N.21 Ligand excluded by PLIP IOD.56: 2 residues within 4Å: Chain D: I.124 Ligands: CL.62 Ligand excluded by PLIP IOD.57: 3 residues within 4Å: Chain C: P.17, N.21 Chain D: R.18 Ligand excluded by PLIP IOD.58: 3 residues within 4Å: Chain D: T.148, I.153, R.167 Ligand excluded by PLIP IOD.65: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.66: 3 residues within 4Å: Chain E: E.35, K.170, R.173 Ligand excluded by PLIP IOD.67: 3 residues within 4Å: Chain C: R.162, Q.219 Chain E: M.144 Ligand excluded by PLIP IOD.68: 2 residues within 4Å: Chain E: I.37, P.38 Ligand excluded by PLIP IOD.69: 2 residues within 4Å: Chain E: S.146, T.148 Ligand excluded by PLIP IOD.70: 2 residues within 4Å: Chain E: L.172, R.173 Ligand excluded by PLIP IOD.71: 1 residues within 4Å: Chain E: N.21 Ligand excluded by PLIP IOD.72: 2 residues within 4Å: Chain E: I.124 Ligands: CL.78 Ligand excluded by PLIP IOD.73: 3 residues within 4Å: Chain A: P.17, N.21 Chain E: R.18 Ligand excluded by PLIP IOD.74: 3 residues within 4Å: Chain E: T.148, I.153, R.167 Ligand excluded by PLIP IOD.81: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.82: 3 residues within 4Å: Chain F: E.35, K.170, R.173 Ligand excluded by PLIP IOD.83: 3 residues within 4Å: Chain A: R.162, Q.219 Chain F: M.144 Ligand excluded by PLIP IOD.84: 2 residues within 4Å: Chain F: I.37, P.38 Ligand excluded by PLIP IOD.85: 2 residues within 4Å: Chain F: S.146, T.148 Ligand excluded by PLIP IOD.86: 2 residues within 4Å: Chain F: L.172, R.173 Ligand excluded by PLIP IOD.87: 1 residues within 4Å: Chain F: N.21 Ligand excluded by PLIP IOD.88: 2 residues within 4Å: Chain F: I.124 Ligands: CL.94 Ligand excluded by PLIP IOD.89: 3 residues within 4Å: Chain B: P.17, N.21 Chain F: R.18 Ligand excluded by PLIP IOD.90: 3 residues within 4Å: Chain F: T.148, I.153, R.167 Ligand excluded by PLIP

36 x CL: CHLORIDE ION(Non-functional Binders)

CL.11: 4 residues within 4Å: Chain A: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.12: 3 residues within 4Å: Chain A: R.18 Chain F: S.16, P.17 Ligand excluded by PLIP CL.13: 3 residues within 4Å: Chain A: A.31, Y.145 Chain E: R.162 Ligand excluded by PLIP CL.14: 1 residues within 4Å: Ligands: IOD.8 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain A: P.160, F.161, R.162 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: P.38, R.173 Chain F: N.57 Ligand excluded by PLIP CL.27: 4 residues within 4Å: Chain B: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.28: 3 residues within 4Å: Chain B: R.18 Chain D: S.16, P.17 Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain B: A.31, Y.145 Chain F: R.162 Ligand excluded by PLIP CL.30: 1 residues within 4Å: Ligands: IOD.24 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain B: P.160, F.161, R.162 Ligand excluded by PLIP CL.32: 3 residues within 4Å: Chain B: P.38, R.173 Chain D: N.57 Ligand excluded by PLIP CL.43: 4 residues within 4Å: Chain C: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain C: R.18 Chain E: S.16, P.17 Ligand excluded by PLIP CL.45: 3 residues within 4Å: Chain C: A.31, Y.145 Chain D: R.162 Ligand excluded by PLIP CL.46: 1 residues within 4Å: Ligands: IOD.40 Ligand excluded by PLIP CL.47: 3 residues within 4Å: Chain C: P.160, F.161, R.162 Ligand excluded by PLIP CL.48: 3 residues within 4Å: Chain C: P.38, R.173 Chain E: N.57 Ligand excluded by PLIP CL.59: 4 residues within 4Å: Chain D: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.60: 3 residues within 4Å: Chain C: S.16, P.17 Chain D: R.18 Ligand excluded by PLIP CL.61: 3 residues within 4Å: Chain B: R.162 Chain D: A.31, Y.145 Ligand excluded by PLIP CL.62: 1 residues within 4Å: Ligands: IOD.56 Ligand excluded by PLIP CL.63: 3 residues within 4Å: Chain D: P.160, F.161, R.162 Ligand excluded by PLIP CL.64: 3 residues within 4Å: Chain C: N.57 Chain D: P.38, R.173 Ligand excluded by PLIP CL.75: 4 residues within 4Å: Chain E: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.76: 3 residues within 4Å: Chain A: S.16, P.17 Chain E: R.18 Ligand excluded by PLIP CL.77: 3 residues within 4Å: Chain C: R.162 Chain E: A.31, Y.145 Ligand excluded by PLIP CL.78: 1 residues within 4Å: Ligands: IOD.72 Ligand excluded by PLIP CL.79: 3 residues within 4Å: Chain E: P.160, F.161, R.162 Ligand excluded by PLIP CL.80: 3 residues within 4Å: Chain A: N.57 Chain E: P.38, R.173 Ligand excluded by PLIP CL.91: 4 residues within 4Å: Chain F: V.27, E.28, G.60, H.62 Ligand excluded by PLIP CL.92: 3 residues within 4Å: Chain B: S.16, P.17 Chain F: R.18 Ligand excluded by PLIP CL.93: 3 residues within 4Å: Chain A: R.162 Chain F: A.31, Y.145 Ligand excluded by PLIP CL.94: 1 residues within 4Å: Ligands: IOD.88 Ligand excluded by PLIP CL.95: 3 residues within 4Å: Chain F: P.160, F.161, R.162 Ligand excluded by PLIP CL.96: 3 residues within 4Å: Chain B: N.57 Chain F: P.38, R.173 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Novikova, M. et al., Identification of a novel element in HIV-1 capsid critical for assembly and maturation. To be published

Release Date

2018-09-12

Peptides

HIV-1 capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HIV-1 capsid protein