SMTL ID : 6axw.1

Structure of the I124A mutant of the HIV-1 capsid protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

54 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 2 residues within 4Å: Chain A: R.173 Chain F: G.61 Ligand excluded by PLIP IOD.3: 2 residues within 4Å: Chain A: I.37, P.38 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: M.144 Chain E: R.162, M.215 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: L.172, R.173, K.182 Ligand excluded by PLIP IOD.6: 2 residues within 4Å: Chain A: G.206, P.207 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: P.17 Chain E: R.18 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: W.80, A.124 Ligand excluded by PLIP IOD.9: 1 residues within 4Å: Chain A: R.18 Ligand excluded by PLIP IOD.20: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.21: 2 residues within 4Å: Chain B: R.173 Chain D: G.61 Ligand excluded by PLIP IOD.22: 2 residues within 4Å: Chain B: I.37, P.38 Ligand excluded by PLIP IOD.23: 3 residues within 4Å: Chain B: M.144 Chain F: R.162, M.215 Ligand excluded by PLIP IOD.24: 3 residues within 4Å: Chain B: L.172, R.173, K.182 Ligand excluded by PLIP IOD.25: 2 residues within 4Å: Chain B: G.206, P.207 Ligand excluded by PLIP IOD.26: 2 residues within 4Å: Chain B: P.17 Chain F: R.18 Ligand excluded by PLIP IOD.27: 2 residues within 4Å: Chain B: W.80, A.124 Ligand excluded by PLIP IOD.28: 1 residues within 4Å: Chain B: R.18 Ligand excluded by PLIP IOD.39: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.40: 2 residues within 4Å: Chain C: R.173 Chain E: G.61 Ligand excluded by PLIP IOD.41: 2 residues within 4Å: Chain C: I.37, P.38 Ligand excluded by PLIP IOD.42: 3 residues within 4Å: Chain C: M.144 Chain D: R.162, M.215 Ligand excluded by PLIP IOD.43: 3 residues within 4Å: Chain C: L.172, R.173, K.182 Ligand excluded by PLIP IOD.44: 2 residues within 4Å: Chain C: G.206, P.207 Ligand excluded by PLIP IOD.45: 2 residues within 4Å: Chain C: P.17 Chain D: R.18 Ligand excluded by PLIP IOD.46: 2 residues within 4Å: Chain C: W.80, A.124 Ligand excluded by PLIP IOD.47: 1 residues within 4Å: Chain C: R.18 Ligand excluded by PLIP IOD.58: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.59: 2 residues within 4Å: Chain C: G.61 Chain D: R.173 Ligand excluded by PLIP IOD.60: 2 residues within 4Å: Chain D: I.37, P.38 Ligand excluded by PLIP IOD.61: 3 residues within 4Å: Chain B: R.162, M.215 Chain D: M.144 Ligand excluded by PLIP IOD.62: 3 residues within 4Å: Chain D: L.172, R.173, K.182 Ligand excluded by PLIP IOD.63: 2 residues within 4Å: Chain D: G.206, P.207 Ligand excluded by PLIP IOD.64: 2 residues within 4Å: Chain B: R.18 Chain D: P.17 Ligand excluded by PLIP IOD.65: 2 residues within 4Å: Chain D: W.80, A.124 Ligand excluded by PLIP IOD.66: 1 residues within 4Å: Chain D: R.18 Ligand excluded by PLIP IOD.77: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.78: 2 residues within 4Å: Chain A: G.61 Chain E: R.173 Ligand excluded by PLIP IOD.79: 2 residues within 4Å: Chain E: I.37, P.38 Ligand excluded by PLIP IOD.80: 3 residues within 4Å: Chain C: R.162, M.215 Chain E: M.144 Ligand excluded by PLIP IOD.81: 3 residues within 4Å: Chain E: L.172, R.173, K.182 Ligand excluded by PLIP IOD.82: 2 residues within 4Å: Chain E: G.206, P.207 Ligand excluded by PLIP IOD.83: 2 residues within 4Å: Chain C: R.18 Chain E: P.17 Ligand excluded by PLIP IOD.84: 2 residues within 4Å: Chain E: W.80, A.124 Ligand excluded by PLIP IOD.85: 1 residues within 4Å: Chain E: R.18 Ligand excluded by PLIP IOD.96: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.97: 2 residues within 4Å: Chain B: G.61 Chain F: R.173 Ligand excluded by PLIP IOD.98: 2 residues within 4Å: Chain F: I.37, P.38 Ligand excluded by PLIP IOD.99: 3 residues within 4Å: Chain A: R.162, M.215 Chain F: M.144 Ligand excluded by PLIP IOD.100: 3 residues within 4Å: Chain F: L.172, R.173, K.182 Ligand excluded by PLIP IOD.101: 2 residues within 4Å: Chain F: G.206, P.207 Ligand excluded by PLIP IOD.102: 2 residues within 4Å: Chain A: R.18 Chain F: P.17 Ligand excluded by PLIP IOD.103: 2 residues within 4Å: Chain F: W.80, A.124 Ligand excluded by PLIP IOD.104: 1 residues within 4Å: Chain F: R.18 Ligand excluded by PLIP

60 x CL: CHLORIDE ION(Non-functional Binders)

CL.10: 3 residues within 4Å: Chain A: E.28, G.60, H.62 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.173 Chain F: N.57 Ligand excluded by PLIP CL.12: 1 residues within 4Å: Chain A: R.97 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: I.153 Ligands: CL.15 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain A: R.167, K.170, T.171 Ligands: CL.15 Ligand excluded by PLIP CL.15: 4 residues within 4Å: Chain A: I.153, R.167 Ligands: CL.13, CL.14 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain A: M.118, P.125, G.127, E.128 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain A: A.31, Y.145 Chain E: R.162 Ligand excluded by PLIP CL.18: 1 residues within 4Å: Chain A: M.96 Ligand excluded by PLIP CL.19: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.29: 3 residues within 4Å: Chain B: E.28, G.60, H.62 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain B: R.173 Chain D: N.57 Ligand excluded by PLIP CL.31: 1 residues within 4Å: Chain B: R.97 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain B: I.153 Ligands: CL.34 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain B: R.167, K.170, T.171 Ligands: CL.34 Ligand excluded by PLIP CL.34: 4 residues within 4Å: Chain B: I.153, R.167 Ligands: CL.32, CL.33 Ligand excluded by PLIP CL.35: 4 residues within 4Å: Chain B: M.118, P.125, G.127, E.128 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain B: A.31, Y.145 Chain F: R.162 Ligand excluded by PLIP CL.37: 1 residues within 4Å: Chain B: M.96 Ligand excluded by PLIP CL.38: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.48: 3 residues within 4Å: Chain C: E.28, G.60, H.62 Ligand excluded by PLIP CL.49: 2 residues within 4Å: Chain C: R.173 Chain E: N.57 Ligand excluded by PLIP CL.50: 1 residues within 4Å: Chain C: R.97 Ligand excluded by PLIP CL.51: 2 residues within 4Å: Chain C: I.153 Ligands: CL.53 Ligand excluded by PLIP CL.52: 4 residues within 4Å: Chain C: R.167, K.170, T.171 Ligands: CL.53 Ligand excluded by PLIP CL.53: 4 residues within 4Å: Chain C: I.153, R.167 Ligands: CL.51, CL.52 Ligand excluded by PLIP CL.54: 4 residues within 4Å: Chain C: M.118, P.125, G.127, E.128 Ligand excluded by PLIP CL.55: 3 residues within 4Å: Chain C: A.31, Y.145 Chain D: R.162 Ligand excluded by PLIP CL.56: 1 residues within 4Å: Chain C: M.96 Ligand excluded by PLIP CL.57: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.67: 3 residues within 4Å: Chain D: E.28, G.60, H.62 Ligand excluded by PLIP CL.68: 2 residues within 4Å: Chain C: N.57 Chain D: R.173 Ligand excluded by PLIP CL.69: 1 residues within 4Å: Chain D: R.97 Ligand excluded by PLIP CL.70: 2 residues within 4Å: Chain D: I.153 Ligands: CL.72 Ligand excluded by PLIP CL.71: 4 residues within 4Å: Chain D: R.167, K.170, T.171 Ligands: CL.72 Ligand excluded by PLIP CL.72: 4 residues within 4Å: Chain D: I.153, R.167 Ligands: CL.70, CL.71 Ligand excluded by PLIP CL.73: 4 residues within 4Å: Chain D: M.118, P.125, G.127, E.128 Ligand excluded by PLIP CL.74: 3 residues within 4Å: Chain B: R.162 Chain D: A.31, Y.145 Ligand excluded by PLIP CL.75: 1 residues within 4Å: Chain D: M.96 Ligand excluded by PLIP CL.76: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.86: 3 residues within 4Å: Chain E: E.28, G.60, H.62 Ligand excluded by PLIP CL.87: 2 residues within 4Å: Chain A: N.57 Chain E: R.173 Ligand excluded by PLIP CL.88: 1 residues within 4Å: Chain E: R.97 Ligand excluded by PLIP CL.89: 2 residues within 4Å: Chain E: I.153 Ligands: CL.91 Ligand excluded by PLIP CL.90: 4 residues within 4Å: Chain E: R.167, K.170, T.171 Ligands: CL.91 Ligand excluded by PLIP CL.91: 4 residues within 4Å: Chain E: I.153, R.167 Ligands: CL.89, CL.90 Ligand excluded by PLIP CL.92: 4 residues within 4Å: Chain E: M.118, P.125, G.127, E.128 Ligand excluded by PLIP CL.93: 3 residues within 4Å: Chain C: R.162 Chain E: A.31, Y.145 Ligand excluded by PLIP CL.94: 1 residues within 4Å: Chain E: M.96 Ligand excluded by PLIP CL.95: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.105: 3 residues within 4Å: Chain F: E.28, G.60, H.62 Ligand excluded by PLIP CL.106: 2 residues within 4Å: Chain B: N.57 Chain F: R.173 Ligand excluded by PLIP CL.107: 1 residues within 4Å: Chain F: R.97 Ligand excluded by PLIP CL.108: 2 residues within 4Å: Chain F: I.153 Ligands: CL.110 Ligand excluded by PLIP CL.109: 4 residues within 4Å: Chain F: R.167, K.170, T.171 Ligands: CL.110 Ligand excluded by PLIP CL.110: 4 residues within 4Å: Chain F: I.153, R.167 Ligands: CL.108, CL.109 Ligand excluded by PLIP CL.111: 4 residues within 4Å: Chain F: M.118, P.125, G.127, E.128 Ligand excluded by PLIP CL.112: 3 residues within 4Å: Chain A: R.162 Chain F: A.31, Y.145 Ligand excluded by PLIP CL.113: 1 residues within 4Å: Chain F: M.96 Ligand excluded by PLIP CL.114: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Novikova, M. et al., Identification of a Structural Element in HIV-1 Gag Required for Virus Particle Assembly and Maturation. MBio (2018)

Release Date

2018-09-12

Peptides

HIV-1 capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HIV-1 capsid protein