SMTL ID : 6axx.1

Structure of the T58A/I124A mutant of the HIV-1 capsid protein

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

48 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 5 residues within 4Å: Chain A: E.35, K.170, R.173 Chain F: G.61, Q.63 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: M.144 Chain E: R.162, Q.219 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: I.37, P.38, S.41 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: L.202, G.206 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: P.17, R.18 Chain E: R.18 Ligand excluded by PLIP IOD.7: 3 residues within 4Å: Chain A: L.172, R.173, K.182 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: W.80, A.124 Ligand excluded by PLIP IOD.18: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.19: 5 residues within 4Å: Chain B: E.35, K.170, R.173 Chain D: G.61, Q.63 Ligand excluded by PLIP IOD.20: 3 residues within 4Å: Chain B: M.144 Chain F: R.162, Q.219 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain B: I.37, P.38, S.41 Ligand excluded by PLIP IOD.22: 2 residues within 4Å: Chain B: L.202, G.206 Ligand excluded by PLIP IOD.23: 3 residues within 4Å: Chain B: P.17, R.18 Chain F: R.18 Ligand excluded by PLIP IOD.24: 3 residues within 4Å: Chain B: L.172, R.173, K.182 Ligand excluded by PLIP IOD.25: 2 residues within 4Å: Chain B: W.80, A.124 Ligand excluded by PLIP IOD.35: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.36: 5 residues within 4Å: Chain C: E.35, K.170, R.173 Chain E: G.61, Q.63 Ligand excluded by PLIP IOD.37: 3 residues within 4Å: Chain C: M.144 Chain D: R.162, Q.219 Ligand excluded by PLIP IOD.38: 3 residues within 4Å: Chain C: I.37, P.38, S.41 Ligand excluded by PLIP IOD.39: 2 residues within 4Å: Chain C: L.202, G.206 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain C: P.17, R.18 Chain D: R.18 Ligand excluded by PLIP IOD.41: 3 residues within 4Å: Chain C: L.172, R.173, K.182 Ligand excluded by PLIP IOD.42: 2 residues within 4Å: Chain C: W.80, A.124 Ligand excluded by PLIP IOD.52: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.53: 5 residues within 4Å: Chain C: G.61, Q.63 Chain D: E.35, K.170, R.173 Ligand excluded by PLIP IOD.54: 3 residues within 4Å: Chain B: R.162, Q.219 Chain D: M.144 Ligand excluded by PLIP IOD.55: 3 residues within 4Å: Chain D: I.37, P.38, S.41 Ligand excluded by PLIP IOD.56: 2 residues within 4Å: Chain D: L.202, G.206 Ligand excluded by PLIP IOD.57: 3 residues within 4Å: Chain B: R.18 Chain D: P.17, R.18 Ligand excluded by PLIP IOD.58: 3 residues within 4Å: Chain D: L.172, R.173, K.182 Ligand excluded by PLIP IOD.59: 2 residues within 4Å: Chain D: W.80, A.124 Ligand excluded by PLIP IOD.69: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.70: 5 residues within 4Å: Chain A: G.61, Q.63 Chain E: E.35, K.170, R.173 Ligand excluded by PLIP IOD.71: 3 residues within 4Å: Chain C: R.162, Q.219 Chain E: M.144 Ligand excluded by PLIP IOD.72: 3 residues within 4Å: Chain E: I.37, P.38, S.41 Ligand excluded by PLIP IOD.73: 2 residues within 4Å: Chain E: L.202, G.206 Ligand excluded by PLIP IOD.74: 3 residues within 4Å: Chain C: R.18 Chain E: P.17, R.18 Ligand excluded by PLIP IOD.75: 3 residues within 4Å: Chain E: L.172, R.173, K.182 Ligand excluded by PLIP IOD.76: 2 residues within 4Å: Chain E: W.80, A.124 Ligand excluded by PLIP IOD.86: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.87: 5 residues within 4Å: Chain B: G.61, Q.63 Chain F: E.35, K.170, R.173 Ligand excluded by PLIP IOD.88: 3 residues within 4Å: Chain A: R.162, Q.219 Chain F: M.144 Ligand excluded by PLIP IOD.89: 3 residues within 4Å: Chain F: I.37, P.38, S.41 Ligand excluded by PLIP IOD.90: 2 residues within 4Å: Chain F: L.202, G.206 Ligand excluded by PLIP IOD.91: 3 residues within 4Å: Chain A: R.18 Chain F: P.17, R.18 Ligand excluded by PLIP IOD.92: 3 residues within 4Å: Chain F: L.172, R.173, K.182 Ligand excluded by PLIP IOD.93: 2 residues within 4Å: Chain F: W.80, A.124 Ligand excluded by PLIP

54 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 2 residues within 4Å: Chain A: G.60, H.62 Ligand excluded by PLIP CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.173 Chain F: N.57 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: G.61, H.62 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain A: M.96, R.97 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain A: T.148, I.153 Ligand excluded by PLIP CL.15: 2 residues within 4Å: Chain A: K.199, K.203 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain A: P.17, R.18 Chain E: R.18 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain A: A.31, Y.145 Chain E: R.162 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain B: G.60, H.62 Ligand excluded by PLIP CL.27: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain B: R.173 Chain D: N.57 Ligand excluded by PLIP CL.29: 2 residues within 4Å: Chain B: G.61, H.62 Ligand excluded by PLIP CL.30: 2 residues within 4Å: Chain B: M.96, R.97 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain B: T.148, I.153 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain B: K.199, K.203 Ligand excluded by PLIP CL.33: 3 residues within 4Å: Chain B: P.17, R.18 Chain F: R.18 Ligand excluded by PLIP CL.34: 3 residues within 4Å: Chain B: A.31, Y.145 Chain F: R.162 Ligand excluded by PLIP CL.43: 2 residues within 4Å: Chain C: G.60, H.62 Ligand excluded by PLIP CL.44: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain C: R.173 Chain E: N.57 Ligand excluded by PLIP CL.46: 2 residues within 4Å: Chain C: G.61, H.62 Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain C: M.96, R.97 Ligand excluded by PLIP CL.48: 2 residues within 4Å: Chain C: T.148, I.153 Ligand excluded by PLIP CL.49: 2 residues within 4Å: Chain C: K.199, K.203 Ligand excluded by PLIP CL.50: 3 residues within 4Å: Chain C: P.17, R.18 Chain D: R.18 Ligand excluded by PLIP CL.51: 3 residues within 4Å: Chain C: A.31, Y.145 Chain D: R.162 Ligand excluded by PLIP CL.60: 2 residues within 4Å: Chain D: G.60, H.62 Ligand excluded by PLIP CL.61: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.62: 2 residues within 4Å: Chain C: N.57 Chain D: R.173 Ligand excluded by PLIP CL.63: 2 residues within 4Å: Chain D: G.61, H.62 Ligand excluded by PLIP CL.64: 2 residues within 4Å: Chain D: M.96, R.97 Ligand excluded by PLIP CL.65: 2 residues within 4Å: Chain D: T.148, I.153 Ligand excluded by PLIP CL.66: 2 residues within 4Å: Chain D: K.199, K.203 Ligand excluded by PLIP CL.67: 3 residues within 4Å: Chain B: R.18 Chain D: P.17, R.18 Ligand excluded by PLIP CL.68: 3 residues within 4Å: Chain B: R.162 Chain D: A.31, Y.145 Ligand excluded by PLIP CL.77: 2 residues within 4Å: Chain E: G.60, H.62 Ligand excluded by PLIP CL.78: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.79: 2 residues within 4Å: Chain A: N.57 Chain E: R.173 Ligand excluded by PLIP CL.80: 2 residues within 4Å: Chain E: G.61, H.62 Ligand excluded by PLIP CL.81: 2 residues within 4Å: Chain E: M.96, R.97 Ligand excluded by PLIP CL.82: 2 residues within 4Å: Chain E: T.148, I.153 Ligand excluded by PLIP CL.83: 2 residues within 4Å: Chain E: K.199, K.203 Ligand excluded by PLIP CL.84: 3 residues within 4Å: Chain C: R.18 Chain E: P.17, R.18 Ligand excluded by PLIP CL.85: 3 residues within 4Å: Chain C: R.162 Chain E: A.31, Y.145 Ligand excluded by PLIP CL.94: 2 residues within 4Å: Chain F: G.60, H.62 Ligand excluded by PLIP CL.95: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.96: 2 residues within 4Å: Chain B: N.57 Chain F: R.173 Ligand excluded by PLIP CL.97: 2 residues within 4Å: Chain F: G.61, H.62 Ligand excluded by PLIP CL.98: 2 residues within 4Å: Chain F: M.96, R.97 Ligand excluded by PLIP CL.99: 2 residues within 4Å: Chain F: T.148, I.153 Ligand excluded by PLIP CL.100: 2 residues within 4Å: Chain F: K.199, K.203 Ligand excluded by PLIP CL.101: 3 residues within 4Å: Chain A: R.18 Chain F: P.17, R.18 Ligand excluded by PLIP CL.102: 3 residues within 4Å: Chain A: R.162 Chain F: A.31, Y.145 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Novikova, M. et al., Identification of a novel element in HIV-1 capsid critical for assembly and maturation. To be published

Release Date

2018-09-12

Peptides

HIV-1 capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HIV-1 capsid protein