SMTL ID : 6aze.1

Crystal Structure of the BPTF PHD-bromodomain module bound to H3KC4me3 methyl lysine analog

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x ALA- ARG- THR- ML3- GLN- THR: ALA-ARG-THR-ML3-GLN-THR(Non-covalent)

ALA-ARG-THR-ML3-GLN-THR.1: 16 residues within 4Å: Chain A: Y.4, Y.11, E.13, S.14, K.15, F.16, Y.17, I.18, G.19, C.20, D.21, Q.24, W.26, A.39, I.42, D.43 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.16, A:I.18 Hydrogen bonds: A:Y.17, A:Y.17, A:G.19, A:C.20, A:I.42 Water bridges: A:C.20, A:C.20 Salt bridges: A:D.21 pi-Cation interactions: A:Y.11, A:W.26, A:W.26

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.5, C.7, H.28, C.31 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.5, A:C.7, A:H.28, A:C.31 ZN.3: 5 residues within 4Å: Chain A: C.20, C.23, Y.27, C.47, C.50 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.20, A:C.23, A:C.47, A:C.50

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Z. et al., Quantitative and structural assessment of methyllysine analog engagement by cognate binding proteins reveals decrements that can impact qualitative experiment interpretation. To be published

Release Date

2018-09-19

Peptides

Nucleosome-remodeling factor subunit BPTF: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleosome-remodeling factor subunit BPTF