SMTL ID : 6azj.1

Crystal Structure of human NAMPT in complex with NVP-LQN520

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

homo-dimer

Ligands

2 x C5V: (1S,2S)-N-{4-[(1,3-dioxo-1,3-dihydro-2H-isoindol-2-yl)methyl]phenyl}-2-(pyridin-3-yl)cyclopropane-1-carboxamide(Non-covalent)

C5V.1: 16 residues within 4Å: Chain A: Y.198, H.201, F.203, R.206, D.229, V.252, A.254, P.283, S.285, P.317, I.319, R.321, I.361, A.389 Chain B: D.26, Y.28 16 PLIP interactions: 14 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:F.203, A:F.203, A:V.252, A:A.254, A:P.283, A:P.317, A:I.361, B:Y.28, B:Y.28 Hydrogen bonds: A:S.285 Water bridges: A:H.201, A:D.229, A:V.252, A:R.321 pi-Stacking: A:H.201, A:F.203 C5V.2: 14 residues within 4Å: Chain A: D.26, Y.28 Chain B: H.201, F.203, R.206, D.229, V.252, A.254, P.283, S.285, I.319, R.321, I.361, A.389 18 PLIP interactions: 16 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:H.201, B:F.203, B:F.203, B:F.203, B:D.229, B:V.252, B:V.252, B:A.254, B:P.283, B:I.319, B:I.361, A:Y.28, A:Y.28 Hydrogen bonds: B:S.285 Water bridges: B:D.229, B:V.252 pi-Stacking: B:H.201, B:F.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palacios, D. et al., Identification and structure based design of cellularly active cyclo-propyl carboxamide Nicotinamide phosphoribosyltransferase (NAMPT) inhibitors. To Be Published

Release Date

2018-09-12

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase