SMTL ID : 6azp.1

A Structurally Dynamic N-terminal Region Drives Function of the Staphylococcal Peroxidase Inhibitor (SPIN)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.29 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 10 residues within 4Å: Chain A: N.189, S.191, N.192, L.197, A.198, V.199, Q.201 Chain B: H.6, S.9 Ligands: BMA.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.201

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: R.314, N.317, V.320 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.314, A:N.317 NAG.4: 4 residues within 4Å: Chain A: N.225, A.228, W.369, L.373 No protein-ligand interaction detected (PLIP)

1 x BMA: beta-D-mannopyranose(Non-functional Binders)

BMA.3: 1 residues within 4Å: Ligands: NAG-NAG.1 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.5: 5 residues within 4Å: Chain A: D.96, T.168, F.170, D.172, S.174 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.96, A:D.96, A:T.168, A:F.170, A:S.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Jong, N.W.M. et al., A structurally dynamic N-terminal region drives function of the staphylococcal peroxidase inhibitor (SPIN). J. Biol. Chem. (2018)

Release Date

2017-12-27

Peptides

Myeloperoxidase: A
Staphylococcal Peroxidase Inhibitor: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Myeloperoxidase

Staphylococcal Peroxidase Inhibitor