SMTL ID : 6b0b.1 (1 other biounit)

Crystal structure of human APOBEC3H

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.28 Å

Oligo State

hetero-1-1-mer

Ligands

1 x U- A- A- A- A- A- A- A: RNA (5'-R(*UP*AP*AP*AP*AP*AP*AP*A)-3')(Non-covalent)

U-A-A-A-A-A-A-A.1: 17 residues within 4Å: Chain A: K.19, R.20, R.21, R.24, Y.26, W.118, K.171, R.174, R.178, R.179, R.182 Ligands: U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2, U-U-U-U-U-U-U-U.2 Protein-ligand interaction information (PLIP) not available

1 x U- U- U- U- U- U- U- U: RNA (5'-R(*UP*UP*UP*UP*UP*UP*UP*U)-3')(Non-covalent)

U-U-U-U-U-U-U-U.2: 13 residues within 4Å: Chain A: Y.27, R.29, W.85, R.113, Y.116, W.118 Ligands: U-A-A-A-A-A-A-A.1, U-A-A-A-A-A-A-A.1, U-A-A-A-A-A-A-A.1, U-A-A-A-A-A-A-A.1, U-A-A-A-A-A-A-A.1, U-A-A-A-A-A-A-A.1, U-A-A-A-A-A-A-A.1 Protein-ligand interaction information (PLIP) not available

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 3 residues within 4Å: Chain A: H.57, C.88, C.91 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.57, A:C.88, A:C.91, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaban, N.M. et al., The Antiviral and Cancer Genomic DNA Deaminase APOBEC3H Is Regulated by an RNA-Mediated Dimerization Mechanism. Mol. Cell (2018)

Release Date

2017-10-25

Peptides

APOBEC3H: A
MCherry: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

APOBEC3H

MCherry

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