SMTL ID : 6b0d.1

An E. coli DPS protein from ferritin superfamily

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-12-mer

Ligands

24 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: R.152 Chain D: I.146 Ligand excluded by PLIP NA.2: 2 residues within 4Å: Chain A: A.149, D.153 Ligand excluded by PLIP NA.3: 2 residues within 4Å: Chain A: I.146 Chain E: R.152 Ligand excluded by PLIP NA.4: 3 residues within 4Å: Chain B: A.149, R.152, D.153 Ligand excluded by PLIP NA.5: 2 residues within 4Å: Chain B: R.152 Chain C: I.146 Ligand excluded by PLIP NA.6: 3 residues within 4Å: Chain C: A.149, R.152, D.153 Ligand excluded by PLIP NA.7: 2 residues within 4Å: Chain C: R.152 Chain L: I.146 Ligand excluded by PLIP NA.9: 3 residues within 4Å: Chain D: A.149, R.152, D.153 Ligand excluded by PLIP NA.10: 2 residues within 4Å: Chain D: R.152 Chain E: I.146 Ligand excluded by PLIP NA.11: 3 residues within 4Å: Chain E: A.149, R.152, D.153 Ligand excluded by PLIP NA.12: 3 residues within 4Å: Chain F: A.149, R.152, D.153 Ligand excluded by PLIP NA.13: 2 residues within 4Å: Chain F: R.152 Chain H: I.146 Ligand excluded by PLIP NA.14: 2 residues within 4Å: Chain G: R.152 Chain J: I.146 Ligand excluded by PLIP NA.15: 2 residues within 4Å: Chain G: A.149, D.153 Ligand excluded by PLIP NA.16: 2 residues within 4Å: Chain G: I.146 Chain K: R.152 Ligand excluded by PLIP NA.17: 3 residues within 4Å: Chain H: A.149, R.152, D.153 Ligand excluded by PLIP NA.18: 2 residues within 4Å: Chain H: R.152 Chain I: I.146 Ligand excluded by PLIP NA.19: 3 residues within 4Å: Chain I: A.149, R.152, D.153 Ligand excluded by PLIP NA.20: 2 residues within 4Å: Chain F: I.146 Chain I: R.152 Ligand excluded by PLIP NA.22: 3 residues within 4Å: Chain J: A.149, R.152, D.153 Ligand excluded by PLIP NA.23: 2 residues within 4Å: Chain J: R.152 Chain K: I.146 Ligand excluded by PLIP NA.24: 3 residues within 4Å: Chain K: A.149, R.152, D.153 Ligand excluded by PLIP NA.25: 3 residues within 4Å: Chain L: A.149, R.152, D.153 Ligand excluded by PLIP NA.26: 2 residues within 4Å: Chain B: I.146 Chain L: R.152 Ligand excluded by PLIP

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.8: 2 residues within 4Å: Chain D: Q.114, E.166 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:E.166 Water bridges: D:K.118, D:E.166 FMT.21: 2 residues within 4Å: Chain J: Q.114, E.166 2 PLIP interactions: 2 interactions with chain J Water bridges: J:K.118, J:E.166

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Simpkin, A.J. et al., SIMBAD: a sequence-independent molecular-replacement pipeline. Acta Crystallogr D Struct Biol (2018)

Release Date

2018-09-19

Peptides

DNA protection during starvation protein: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
A

H
B

I
C

J
D

K
E

L
F

DNA protection during starvation protein