SMTL ID : 6b0f.1

ESTROGEN RECEPTOR ALPHA LIGAND BINDING DOMAIN IN COMPLEX WITH LSZ102

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.86 Å

Oligo State

homo-dimer

Ligands

2 x C6V: LSZ102(Non-covalent)

C6V.1: 22 residues within 4Å: Chain A: M.44, L.47, T.48, L.50, A.51, E.54, L.88, M.89, L.92, R.95, F.105, M.122, I.125, F.126, L.129, G.222, H.225, L.226, Y.227, K.232, N.233, V.234 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.47, A:T.48, A:L.50, A:A.51, A:L.88, A:I.125, A:F.126, A:L.129, A:L.226, A:L.226, A:L.226, A:V.234 Hydrogen bonds: A:E.54, A:R.95, A:Y.227, A:Y.227, A:N.233, A:V.234 Water bridges: A:L.92 pi-Stacking: A:F.105, A:F.105 C6V.4: 17 residues within 4Å: Chain B: M.44, L.47, T.48, L.50, A.51, E.54, L.85, L.88, R.95, F.105, M.122, I.125, F.126, L.129, G.222, H.225, L.226 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:T.48, B:L.50, B:A.51, B:L.85, B:L.88, B:I.125, B:F.126, B:L.226, B:L.226, B:L.226 Hydrogen bonds: B:E.54, B:R.95, B:R.95 pi-Stacking: B:F.105, B:F.105

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: E.24, P.26, I.27, E.54, G.91, R.95, K.150 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.24, A:E.54, A:E.54, A:R.95, A:K.150, A:K.150 GOL.3: 5 residues within 4Å: Chain A: N.140, Q.142, E.145, A.194, R.204 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.142, A:E.145 GOL.5: 4 residues within 4Å: Chain B: L.28, Y.29, R.53, H.57 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.29, B:R.53, B:H.57 Water bridges: B:H.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tria, G.S. et al., Discovery of LSZ102, a Potent, Orally Bioavailable Selective Estrogen Receptor Degrader (SERD) for the Treatment of Estrogen Receptor Positive Breast Cancer. J. Med. Chem. (2018)

Release Date

2018-04-04

Peptides

Estrogen receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Estrogen receptor

Related Entries With Identical Sequence