SMTL ID : 6b0q.1 (1 other biounit)

Zinc finger Domain of WT1(-KTS form) with 13+1mer Oligonucleotide with 3' Triplet TGT

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.12, H.25, H.29 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.12, A:H.25, A:H.29 ZN.2: 4 residues within 4Å: Chain A: C.37, C.42, H.55, H.59 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.37, A:C.42, A:H.55, A:H.59 ZN.3: 4 residues within 4Å: Chain A: C.67, C.70, H.83, H.87 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.67, A:C.70, A:H.83, A:H.87 ZN.4: 4 residues within 4Å: Chain A: C.95, C.100, H.113, H.117 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.95, A:C.100, A:H.113, A:H.117

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 1 residues within 4Å: Chain A: R.44 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.44 SO4.6: 5 residues within 4Å: Chain A: R.15, Y.16, F.17, K.18, H.21 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.17, A:K.18 Salt bridges: A:K.18, A:H.21 SO4.7: 3 residues within 4Å: Chain A: K.18, L.19, S.20 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.19, A:S.20 SO4.8: 2 residues within 4Å: Chain A: R.72 Chain B: G.4 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, D. et al., Role for first zinc finger of WT1 in DNA sequence specificity: Denys-Drash syndrome-associated WT1 mutant in ZF1 enhances affinity for a subset of WT1 binding sites. Nucleic Acids Res. (2018)

Release Date

2018-01-03

Peptides

Wilms tumor protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Wilms tumor protein

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