SMTL ID : 6b0w.1

Crystal structure of the anti-circumsporozoite protein 1710 antibody

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-mer

Ligands

6 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 4 residues within 4Å: Chain A: D.152, S.153, S.193, E.204 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.204 IPA.6: 5 residues within 4Å: Chain B: P.129, S.130, V.131, V.217, K.219 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:V.217 IPA.7: 4 residues within 4Å: Chain B: N.165, A.168, L.169, Q.202 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:N.165, B:A.168 Hydrogen bonds: B:N.165 IPA.8: 4 residues within 4Å: Chain B: E.158, V.160, A.178, L.188 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.188 Hydrogen bonds: B:E.158, B:A.178 IPA.9: 6 residues within 4Å: Chain B: D.62, S.63, V.64, K.65, R.67, R.87 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.67 IPA.10: 4 residues within 4Å: Chain B: S.25, G.26, F.27, N.77 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.26 Water bridges: B:F.29

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: H.198, E.199, S.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.198, A:S.201 GOL.3: 3 residues within 4Å: Chain A: Q.37, K.39, P.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.37, A:K.39 Water bridges: A:K.39, A:M.81 GOL.4: 4 residues within 4Å: Chain A: Y.3, E.4, G.25, D.26 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.4, A:D.26 GOL.5: 8 residues within 4Å: Chain A: A.151, V.156, K.157, A.158, S.180, L.181, Q.185, Y.192 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.157, A:S.180, A:Y.192, A:Y.192 GOL.11: 4 residues within 4Å: Chain A: Y.49, P.55 Chain B: W.109, D.111 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.109 Water bridges: B:D.111 GOL.12: 6 residues within 4Å: Chain B: Y.60, K.65, G.66, R.67, F.68, T.69 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.66, B:F.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scally, S.W. et al., Rare PfCSP C-terminal antibodies induced by live sporozoite vaccination are ineffective against malaria infection. J. Exp. Med. (2018)

Release Date

2017-11-08

Peptides

1710 antibody, light chain: A
1710 antibody, heavy chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

1710 antibody, light chain

1710 antibody, heavy chain

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