SMTL ID : 6b2g.1

P38A mutant of HIV-1 capsid protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-hexamer

Ligands

48 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 4 residues within 4Å: Chain A: E.35, R.173 Chain F: G.61, Q.63 Ligand excluded by PLIP IOD.3: 3 residues within 4Å: Chain A: L.172, R.173, K.182 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: R.18 Chain F: P.17, N.21 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: M.144 Chain E: Q.219 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: N.21 Chain E: A.22, M.39 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: S.41 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain A: F.161, R.162, C.218 Ligand excluded by PLIP IOD.14: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.15: 4 residues within 4Å: Chain B: E.35, R.173 Chain D: G.61, Q.63 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain B: L.172, R.173, K.182 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain B: R.18 Chain D: P.17, N.21 Ligand excluded by PLIP IOD.18: 2 residues within 4Å: Chain B: M.144 Chain F: Q.219 Ligand excluded by PLIP IOD.19: 3 residues within 4Å: Chain B: N.21 Chain F: A.22, M.39 Ligand excluded by PLIP IOD.20: 1 residues within 4Å: Chain B: S.41 Ligand excluded by PLIP IOD.21: 3 residues within 4Å: Chain B: F.161, R.162, C.218 Ligand excluded by PLIP IOD.27: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.28: 4 residues within 4Å: Chain C: E.35, R.173 Chain E: G.61, Q.63 Ligand excluded by PLIP IOD.29: 3 residues within 4Å: Chain C: L.172, R.173, K.182 Ligand excluded by PLIP IOD.30: 3 residues within 4Å: Chain C: R.18 Chain E: P.17, N.21 Ligand excluded by PLIP IOD.31: 2 residues within 4Å: Chain C: M.144 Chain D: Q.219 Ligand excluded by PLIP IOD.32: 3 residues within 4Å: Chain C: N.21 Chain D: A.22, M.39 Ligand excluded by PLIP IOD.33: 1 residues within 4Å: Chain C: S.41 Ligand excluded by PLIP IOD.34: 3 residues within 4Å: Chain C: F.161, R.162, C.218 Ligand excluded by PLIP IOD.40: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.41: 4 residues within 4Å: Chain C: G.61, Q.63 Chain D: E.35, R.173 Ligand excluded by PLIP IOD.42: 3 residues within 4Å: Chain D: L.172, R.173, K.182 Ligand excluded by PLIP IOD.43: 3 residues within 4Å: Chain C: P.17, N.21 Chain D: R.18 Ligand excluded by PLIP IOD.44: 2 residues within 4Å: Chain B: Q.219 Chain D: M.144 Ligand excluded by PLIP IOD.45: 3 residues within 4Å: Chain B: A.22, M.39 Chain D: N.21 Ligand excluded by PLIP IOD.46: 1 residues within 4Å: Chain D: S.41 Ligand excluded by PLIP IOD.47: 3 residues within 4Å: Chain D: F.161, R.162, C.218 Ligand excluded by PLIP IOD.53: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.54: 4 residues within 4Å: Chain A: G.61, Q.63 Chain E: E.35, R.173 Ligand excluded by PLIP IOD.55: 3 residues within 4Å: Chain E: L.172, R.173, K.182 Ligand excluded by PLIP IOD.56: 3 residues within 4Å: Chain A: P.17, N.21 Chain E: R.18 Ligand excluded by PLIP IOD.57: 2 residues within 4Å: Chain C: Q.219 Chain E: M.144 Ligand excluded by PLIP IOD.58: 3 residues within 4Å: Chain C: A.22, M.39 Chain E: N.21 Ligand excluded by PLIP IOD.59: 1 residues within 4Å: Chain E: S.41 Ligand excluded by PLIP IOD.60: 3 residues within 4Å: Chain E: F.161, R.162, C.218 Ligand excluded by PLIP IOD.66: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.67: 4 residues within 4Å: Chain B: G.61, Q.63 Chain F: E.35, R.173 Ligand excluded by PLIP IOD.68: 3 residues within 4Å: Chain F: L.172, R.173, K.182 Ligand excluded by PLIP IOD.69: 3 residues within 4Å: Chain B: P.17, N.21 Chain F: R.18 Ligand excluded by PLIP IOD.70: 2 residues within 4Å: Chain A: Q.219 Chain F: M.144 Ligand excluded by PLIP IOD.71: 3 residues within 4Å: Chain A: A.22, M.39 Chain F: N.21 Ligand excluded by PLIP IOD.72: 1 residues within 4Å: Chain F: S.41 Ligand excluded by PLIP IOD.73: 3 residues within 4Å: Chain F: F.161, R.162, C.218 Ligand excluded by PLIP

30 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 3 residues within 4Å: Chain A: S.16, P.17 Chain E: R.18 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain A: F.32, H.62, Y.145 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: I.153, R.167 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain A: R.173 Chain F: N.57 Ligand excluded by PLIP CL.13: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain B: S.16, P.17 Chain F: R.18 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain B: F.32, H.62, Y.145 Ligand excluded by PLIP CL.24: 2 residues within 4Å: Chain B: I.153, R.167 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain B: R.173 Chain D: N.57 Ligand excluded by PLIP CL.26: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain C: S.16, P.17 Chain D: R.18 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain C: F.32, H.62, Y.145 Ligand excluded by PLIP CL.37: 2 residues within 4Å: Chain C: I.153, R.167 Ligand excluded by PLIP CL.38: 2 residues within 4Å: Chain C: R.173 Chain E: N.57 Ligand excluded by PLIP CL.39: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.48: 3 residues within 4Å: Chain B: R.18 Chain D: S.16, P.17 Ligand excluded by PLIP CL.49: 3 residues within 4Å: Chain D: F.32, H.62, Y.145 Ligand excluded by PLIP CL.50: 2 residues within 4Å: Chain D: I.153, R.167 Ligand excluded by PLIP CL.51: 2 residues within 4Å: Chain C: N.57 Chain D: R.173 Ligand excluded by PLIP CL.52: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.61: 3 residues within 4Å: Chain C: R.18 Chain E: S.16, P.17 Ligand excluded by PLIP CL.62: 3 residues within 4Å: Chain E: F.32, H.62, Y.145 Ligand excluded by PLIP CL.63: 2 residues within 4Å: Chain E: I.153, R.167 Ligand excluded by PLIP CL.64: 2 residues within 4Å: Chain A: N.57 Chain E: R.173 Ligand excluded by PLIP CL.65: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.74: 3 residues within 4Å: Chain A: R.18 Chain F: S.16, P.17 Ligand excluded by PLIP CL.75: 3 residues within 4Å: Chain F: F.32, H.62, Y.145 Ligand excluded by PLIP CL.76: 2 residues within 4Å: Chain F: I.153, R.167 Ligand excluded by PLIP CL.77: 2 residues within 4Å: Chain B: N.57 Chain F: R.173 Ligand excluded by PLIP CL.78: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gres, A.T. et al., Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization. Nat Commun (2023)

Release Date

2018-09-26

Peptides

HIV-1 capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HIV-1 capsid protein