SMTL ID : 6b2h.1

P38A/T216I mutant of the HIV-1 capsid protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-hexamer

Ligands

36 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 4 residues within 4Å: Chain A: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: E.35, R.173 Chain F: G.61 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: R.18 Ligand excluded by PLIP IOD.4: 3 residues within 4Å: Chain A: L.172, R.173, K.182 Ligand excluded by PLIP IOD.5: 3 residues within 4Å: Chain A: P.160, F.161, C.218 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: M.144 Chain E: R.162, Q.219 Ligand excluded by PLIP IOD.13: 4 residues within 4Å: Chain B: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.14: 3 residues within 4Å: Chain B: E.35, R.173 Chain D: G.61 Ligand excluded by PLIP IOD.15: 1 residues within 4Å: Chain B: R.18 Ligand excluded by PLIP IOD.16: 3 residues within 4Å: Chain B: L.172, R.173, K.182 Ligand excluded by PLIP IOD.17: 3 residues within 4Å: Chain B: P.160, F.161, C.218 Ligand excluded by PLIP IOD.18: 3 residues within 4Å: Chain B: M.144 Chain F: R.162, Q.219 Ligand excluded by PLIP IOD.25: 4 residues within 4Å: Chain C: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.26: 3 residues within 4Å: Chain C: E.35, R.173 Chain E: G.61 Ligand excluded by PLIP IOD.27: 1 residues within 4Å: Chain C: R.18 Ligand excluded by PLIP IOD.28: 3 residues within 4Å: Chain C: L.172, R.173, K.182 Ligand excluded by PLIP IOD.29: 3 residues within 4Å: Chain C: P.160, F.161, C.218 Ligand excluded by PLIP IOD.30: 3 residues within 4Å: Chain C: M.144 Chain D: R.162, Q.219 Ligand excluded by PLIP IOD.37: 4 residues within 4Å: Chain D: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.38: 3 residues within 4Å: Chain C: G.61 Chain D: E.35, R.173 Ligand excluded by PLIP IOD.39: 1 residues within 4Å: Chain D: R.18 Ligand excluded by PLIP IOD.40: 3 residues within 4Å: Chain D: L.172, R.173, K.182 Ligand excluded by PLIP IOD.41: 3 residues within 4Å: Chain D: P.160, F.161, C.218 Ligand excluded by PLIP IOD.42: 3 residues within 4Å: Chain B: R.162, Q.219 Chain D: M.144 Ligand excluded by PLIP IOD.49: 4 residues within 4Å: Chain E: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.50: 3 residues within 4Å: Chain A: G.61 Chain E: E.35, R.173 Ligand excluded by PLIP IOD.51: 1 residues within 4Å: Chain E: R.18 Ligand excluded by PLIP IOD.52: 3 residues within 4Å: Chain E: L.172, R.173, K.182 Ligand excluded by PLIP IOD.53: 3 residues within 4Å: Chain E: P.160, F.161, C.218 Ligand excluded by PLIP IOD.54: 3 residues within 4Å: Chain C: R.162, Q.219 Chain E: M.144 Ligand excluded by PLIP IOD.61: 4 residues within 4Å: Chain F: G.156, P.157, K.158, E.159 Ligand excluded by PLIP IOD.62: 3 residues within 4Å: Chain B: G.61 Chain F: E.35, R.173 Ligand excluded by PLIP IOD.63: 1 residues within 4Å: Chain F: R.18 Ligand excluded by PLIP IOD.64: 3 residues within 4Å: Chain F: L.172, R.173, K.182 Ligand excluded by PLIP IOD.65: 3 residues within 4Å: Chain F: P.160, F.161, C.218 Ligand excluded by PLIP IOD.66: 3 residues within 4Å: Chain A: R.162, Q.219 Chain F: M.144 Ligand excluded by PLIP

36 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 3 residues within 4Å: Chain A: R.18 Chain F: S.16, P.17 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: F.32, Y.145 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: R.173 Chain F: N.57 Ligand excluded by PLIP CL.10: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: I.153, R.167 Ligand excluded by PLIP CL.12: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: R.18 Chain D: S.16, P.17 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain B: F.32, Y.145 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain B: R.173 Chain D: N.57 Ligand excluded by PLIP CL.22: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.23: 2 residues within 4Å: Chain B: I.153, R.167 Ligand excluded by PLIP CL.24: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain C: R.18 Chain E: S.16, P.17 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain C: F.32, Y.145 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain C: R.173 Chain E: N.57 Ligand excluded by PLIP CL.34: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.35: 2 residues within 4Å: Chain C: I.153, R.167 Ligand excluded by PLIP CL.36: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.43: 3 residues within 4Å: Chain C: S.16, P.17 Chain D: R.18 Ligand excluded by PLIP CL.44: 2 residues within 4Å: Chain D: F.32, Y.145 Ligand excluded by PLIP CL.45: 2 residues within 4Å: Chain C: N.57 Chain D: R.173 Ligand excluded by PLIP CL.46: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.47: 2 residues within 4Å: Chain D: I.153, R.167 Ligand excluded by PLIP CL.48: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.55: 3 residues within 4Å: Chain A: S.16, P.17 Chain E: R.18 Ligand excluded by PLIP CL.56: 2 residues within 4Å: Chain E: F.32, Y.145 Ligand excluded by PLIP CL.57: 2 residues within 4Å: Chain A: N.57 Chain E: R.173 Ligand excluded by PLIP CL.58: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.59: 2 residues within 4Å: Chain E: I.153, R.167 Ligand excluded by PLIP CL.60: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.67: 3 residues within 4Å: Chain B: S.16, P.17 Chain F: R.18 Ligand excluded by PLIP CL.68: 2 residues within 4Å: Chain F: F.32, Y.145 Ligand excluded by PLIP CL.69: 2 residues within 4Å: Chain B: N.57 Chain F: R.173 Ligand excluded by PLIP CL.70: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.71: 2 residues within 4Å: Chain F: I.153, R.167 Ligand excluded by PLIP CL.72: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gres, A.T. et al., Multidisciplinary studies with mutated HIV-1 capsid proteins reveal structural mechanisms of lattice stabilization. Nat Commun (2023)

Release Date

2018-09-26

Peptides

HIV-1 capsid protein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

HIV-1 capsid protein