SMTL ID : 6b40.1

BbRAGL-3'TIR synaptic complex with nicked DNA refined with C2 symmetry

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: D.234, G.235 Chain B: G.47, C.48 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.234, A:D.234 CA.3: 4 residues within 4Å: Chain F: D.234, G.235 Chain G: G.47, C.48 2 PLIP interactions: 2 interactions with chain F Metal complexes: F:D.234, F:D.234

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.363, C.366, H.568, H.573 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.363, A:C.366, A:H.568, A:H.573 ZN.4: 4 residues within 4Å: Chain F: C.363, C.366, H.568, H.573 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.363, F:C.366, F:H.568, F:H.573

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, Y. et al., Transposon molecular domestication and the evolution of the RAG recombinase. Nature (2019)

Release Date

2019-03-20

Peptides

RAG1L,RAG1L: AF
RAG2L: EJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

F
E

E
M

J
N

RAG1L,RAG1L

RAG2L