SMTL ID : 6b4e.2 (1 other biounit)

Crystal structure of Saccharomyces cerevisiae Gle1 CTD-Nup42 GBM complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: M.1, T.2, N.3, K.6, I.7, M.10, R.214 Chain B: D.30 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.30, A:N.3 Water bridges: B:D.30 EDO.2: 8 residues within 4Å: Chain A: I.147, W.158, N.169, Y.172, D.173, T.224, N.225, T.226 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.173, A:T.226 Water bridges: A:N.225, A:N.225

1 x PRO: PROLINE(Non-covalent)

PRO.3: 7 residues within 4Å: Chain A: I.29, K.30, R.37, L.40, S.41, K.44, W.84 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.29 Hydrogen bonds: A:K.44 Water bridges: A:W.84, A:W.84 Salt bridges: A:K.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, D.H. et al., Structural and functional analysis of mRNA export regulation by the nuclear pore complex. Nat Commun (2018)

Release Date

2018-06-20

Peptides

Nucleoporin GLE1: A
Nucleoporin NUP42: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nucleoporin GLE1

Nucleoporin NUP42

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