SMTL ID : 6b4j.1 (1 other biounit)

Crystal structure of human Gle1 CTD-Nup42 GBM-DDX19B(AMPPNP) complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.40 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: S.312, R.316 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.312 PO4.2: 2 residues within 4Å: Chain A: K.296, H.300 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.300 PO4.3: 6 residues within 4Å: Chain C: N.14, R.250, R.346, G.347, H.376, R.380 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.376 Salt bridges: C:R.250, C:R.346, C:R.380 PO4.4: 7 residues within 4Å: Chain C: R.150, T.168, P.169, G.170, T.171, H.204, Q.207 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.168, C:G.170, C:T.171, C:H.204 Salt bridges: C:R.150

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 7 residues within 4Å: Chain C: K.15, K.95, T.96, F.99, D.193, E.194 Ligands: ANP.6 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:T.96, C:D.193

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.6: 27 residues within 4Å: Chain C: K.15, R.18, S.19, N.20, L.21, F.45, M.61, G.62, F.63, R.65, P.66, S.67, Q.70, S.89, Q.90, S.91, G.92, T.93, G.94, K.95, T.96, A.97, V.132, D.193, E.194, A.226 Ligands: MG.5 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:K.15, C:S.19, C:R.65, C:S.67, C:Q.70, C:S.91, C:G.92, C:T.93, C:T.93, C:T.93, C:G.94, C:K.95, C:K.95, C:T.96, C:A.97, C:E.194, C:E.194 pi-Stacking: C:F.63, C:F.63

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, D.H. et al., Structural and functional analysis of mRNA export regulation by the nuclear pore complex. Nat Commun (2018)

Release Date

2018-06-20

Peptides

Nucleoporin GLE1: A
Nucleoporin like 2: B
ATP-dependent RNA helicase DDX19B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

C
F

Nucleoporin GLE1

Nucleoporin like 2

ATP-dependent RNA helicase DDX19B

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