SMTL ID : 6b4r.1

The crystal structure of the aldehyde dehydrogenase KauB from Pseudomonas aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-tetramer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: D.71 Chain B: V.419, N.423 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.419, B:N.423, A:D.71 EDO.2: 5 residues within 4Å: Chain A: S.480, L.481, H.482 Chain B: E.141 Chain D: Y.139 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.480, A:L.481, A:H.482 EDO.5: 5 residues within 4Å: Chain B: E.96, N.97, A.98, E.99, E.100 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:A.98, B:E.99, B:E.100, B:E.100, B:E.100 EDO.9: 6 residues within 4Å: Chain A: P.146, H.147 Chain C: R.77, L.78, A.79, K.82 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrogen bonds: A:H.147, C:R.77, C:A.79 Water bridges: A:A.148

4 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: C.39, L.40, D.108, K.195 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.40, A:D.108, A:D.108, A:K.195, H2O.3 K.6: 4 residues within 4Å: Chain B: C.39, L.40, D.108, K.195 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:L.40, B:D.108, B:D.108, H2O.8 K.10: 4 residues within 4Å: Chain C: C.39, L.40, D.108, K.195 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:L.40, C:D.108, C:D.108, C:K.195, H2O.15 K.12: 4 residues within 4Å: Chain D: C.39, L.40, D.108, K.195 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:L.40, D:D.108, D:D.108, D:K.195

3 x TOE: 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL(Non-covalent)

TOE.4: 9 residues within 4Å: Chain A: I.119, N.168, F.169, M.173, W.176, C.302, T.303, D.459, F.467 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.168 TOE.8: 11 residues within 4Å: Chain B: N.168, F.169, M.173, W.176, V.301, C.302, T.303, D.459, G.461, F.467, K.479 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.168, B:C.302, B:K.479 TOE.11: 7 residues within 4Å: Chain C: N.168, F.169, V.301, C.302, T.303, D.459, F.467 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:N.168, C:T.303

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 7 residues within 4Å: Chain B: L.16, K.17, I.18, E.19, E.100, L.104, R.202 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.19, B:E.100 Water bridges: B:R.202, B:R.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cardona-Cardona, Y. et al., Aldehyde specificity of the aldehyde dehydrogenase KauB from Pseudomonas aeruginosa: Critical amino acid residues revealed by its crystal structure. To Be Published

Release Date

2018-10-03

Peptides

KauB: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

KauB