- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x DAU: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: K.23, D.108, D.222
- Ligands: DAU.1
5 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:D.108, A:D.222, H2O.1, H2O.1, DAU.1
MG.6: 4 residues within 4Å:- Chain B: K.23, D.108, D.222
- Ligands: DAU.5
5 PLIP interactions:2 interactions with chain B, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: B:D.108, B:D.222, DAU.5, H2O.8, H2O.9
MG.10: 4 residues within 4Å:- Chain C: K.23, D.108, D.222
- Ligands: DAU.8
5 PLIP interactions:2 interactions with chain C, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: C:D.108, C:D.222, DAU.8, H2O.14, H2O.15
MG.12: 4 residues within 4Å:- Chain D: K.23, D.108, D.222
- Ligands: DAU.11
5 PLIP interactions:2 interactions with chain D, 1 Ligand-Ligand interactions, 2 Ligand-Water interactions- Metal complexes: D:D.108, D:D.222, DAU.11, H2O.21, H2O.22
- 3 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
TYD.3: 14 residues within 4Å:- Chain A: M.43, Y.112, G.113, P.114, G.115, L.116, G.117, T.118, S.119, V.247, S.248, E.252, V.253, R.256
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:G.113, A:G.113, A:G.115, A:G.117, A:T.118, A:S.119, A:S.248
- Water bridges: A:I.249, A:I.249, A:R.256
TYD.7: 14 residues within 4Å:- Chain B: M.43, Y.112, G.113, P.114, G.115, L.116, G.117, T.118, S.119, V.247, S.248, E.252, V.253, R.256
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:G.113, B:G.113, B:G.115, B:G.117, B:T.118, B:T.118, B:S.119, B:S.119, B:S.248
- Water bridges: B:I.249, B:I.249, B:R.256
TYD.13: 14 residues within 4Å:- Chain D: M.43, Y.112, G.113, P.114, G.115, L.116, G.117, T.118, S.119, V.247, S.248, E.252, V.253, R.256
12 PLIP interactions:12 interactions with chain D- Hydrogen bonds: D:G.113, D:G.113, D:G.115, D:G.117, D:T.118, D:T.118, D:S.119, D:S.119, D:S.248
- Water bridges: D:I.249, D:E.252, D:R.256
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brown, H.A. et al., The structure of glucose-1-phosphate thymidylyltransferase from Mycobacterium tuberculosis reveals the location of an essential magnesium ion in the RmlA-type enzymes. Protein Sci. (2018)
- Release Date
- 2018-02-21
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
ED
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.85 Å
- Oligo State
- homo-tetramer
- Ligands
- 5 x DAU: 2'DEOXY-THYMIDINE-5'-DIPHOSPHO-ALPHA-D-GLUCOSE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 3 x TYD: THYMIDINE-5'-DIPHOSPHATE(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brown, H.A. et al., The structure of glucose-1-phosphate thymidylyltransferase from Mycobacterium tuberculosis reveals the location of an essential magnesium ion in the RmlA-type enzymes. Protein Sci. (2018)
- Release Date
- 2018-02-21
- Peptides
- Glucose-1-phosphate thymidylyltransferase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
ED
G