SMTL ID : 6b5q.1 (1 other biounit)

DCN1 bound to 38

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x PPI- CZS- 2KY- MLY- 1XY: Peptidomimetic Inhibitors DI-591(Non-covalent)

PPI-CZS-2KY-MLY-1XY.1: 23 residues within 4Å: Chain A: I.49, I.52, Q.53, P.63, A.64, S.65, V.68, L.69, A.72, A.77, T.79, Q.80, C.81, E.82, F.83, F.130, A.131, K.132, N.133, M.143, A.146, Y.147, L.150 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.49, A:I.52, A:I.52, A:V.68, A:L.69, A:A.77, A:F.83, A:F.130, A:A.146, A:Y.147, A:L.150 Hydrogen bonds: A:P.63, A:Q.80, A:C.81, A:Y.147, A:Y.147

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 5 residues within 4Å: Chain A: W.73, K.74, R.76, E.94, D.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.73, A:K.74 Water bridges: A:E.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, H. et al., High-Affinity Peptidomimetic Inhibitors of the DCN1-UBC12 Protein-Protein Interaction. J. Med. Chem. (2018)

Release Date

2018-02-28

Peptides

DCN1-like protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DCN1-like protein 1

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