- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x XCC: FE(4)-NI(1)-S(4) CLUSTER(Non-covalent)
XCC.2: 12 residues within 4Å:- Chain A: H.274, C.309, C.310, H.327, C.348, G.455, C.456, C.486, C.527, Y.561, S.562, K.564
8 PLIP interactions:6 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.274, A:C.310, A:C.348, A:C.456, A:C.486, A:C.527, H2O.4, H2O.4
XCC.9: 12 residues within 4Å:- Chain B: H.274, C.309, C.310, H.327, C.348, G.455, C.456, C.486, C.527, Y.561, S.562, K.564
8 PLIP interactions:6 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.274, B:C.310, B:C.348, B:C.456, B:C.486, B:C.527, H2O.18, H2O.18
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 6 residues within 4Å:- Chain A: A.86, D.87, G.589, S.590, E.591, N.592
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.589, A:E.591, A:N.592, A:N.592
- Water bridges: A:A.86, A:A.86
GOL.10: 7 residues within 4Å:- Chain A: C.50, F.52, R.68
- Chain B: C.50, F.52, R.68
- Ligands: FES.7
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:R.68, B:R.68, A:R.68
GOL.11: 4 residues within 4Å:- Chain B: A.140, E.141, L.142, G.143
2 PLIP interactions:2 interactions with chain B- Water bridges: B:A.140, B:E.141
GOL.12: 6 residues within 4Å:- Chain B: A.86, D.87, G.589, S.590, E.591, N.592
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:E.591, B:N.592, B:N.592
- Water bridges: B:A.86, B:A.86, B:D.87, B:N.592
GOL.13: 6 residues within 4Å:- Chain A: P.369
- Chain B: G.192, R.208, S.219, V.222, R.226
10 PLIP interactions:3 interactions with chain A, 7 interactions with chain B- Hydrogen bonds: A:P.369, B:G.192, B:R.208, B:R.208, B:S.219, B:R.226
- Water bridges: A:R.372, A:R.372, B:R.226, B:R.226
GOL.14: 7 residues within 4Å:- Chain B: D.111, V.277, Y.346, T.367, S.368, P.369, V.381
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.111, B:S.368
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
MG.4: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)MG.16: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wittenborn, E.C. et al., Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase. Elife (2018)
- Release Date
- 2018-10-03
- Peptides
- Carbon monoxide dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.84 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 2 x XCC: FE(4)-NI(1)-S(4) CLUSTER(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wittenborn, E.C. et al., Redox-dependent rearrangements of the NiFeS cluster of carbon monoxide dehydrogenase. Elife (2018)
- Release Date
- 2018-10-03
- Peptides
- Carbon monoxide dehydrogenase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B