SMTL ID : 6b72.1 (2 other biounits)

A novel HIV-1 Nef dimer interface induced by a single octyl-glucoside molecule

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

homo-dimer

Ligands

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 7 residues within 4Å: Chain A: L.60, W.61, H.64 Chain B: Q.21, I.57, W.61, H.64 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.57, B:H.64, A:L.60, A:H.64 Hydrogen bonds: B:H.64, A:H.64

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, M. et al., A single beta-octyl glucoside molecule induces HIV-1 Nef dimer formation in the absence of partner protein binding. PLoS ONE (2018)

Release Date

2018-02-21

Peptides

Protein Nef: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein Nef

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