SMTL ID : 6b7q.1

Crystal structure of Legionella effector protein sdeA (lpg2157) aa. 211-910

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

10 x HG: MERCURY (II) ION(Non-covalent)

HG.1: 3 residues within 4Å: Chain A: E.56, Q.70, H.71 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.71 HG.2: 2 residues within 4Å: Chain A: H.202, M.203 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.202 HG.3: 2 residues within 4Å: Chain A: D.255, H.330 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.330, H2O.5 HG.4: 4 residues within 4Å: Chain A: S.256, D.257, G.328, H.330 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.330 HG.5: 2 residues within 4Å: Chain A: L.434, C.438 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:C.438, H2O.6, H2O.7 HG.6: 3 residues within 4Å: Chain A: C.413, L.420, I.421 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.413, A:L.420 HG.7: 2 residues within 4Å: Chain A: D.412, H.415 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.412, A:H.415 HG.8: 2 residues within 4Å: Chain A: D.412, H.461 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.412, A:H.461 HG.9: 1 residues within 4Å: Chain A: H.501 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.501 HG.10: 4 residues within 4Å: Chain A: H.468, P.472, A.474, P.476 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:P.472, A:A.474

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akturk, A. et al., Mechanism of phosphoribosyl-ubiquitination mediated by a single Legionella effector. Nature (2018)

Release Date

2018-04-18

Peptides

SdeA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SdeA