SMTL ID : 6b82.1

Zebra Fish CYP-450 17A1 Mutant Abiraterone Complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.03 Å

Oligo State

homo-dimer

Ligands

2 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: L.83, R.93, I.109, A.110, W.118, R.122, I.294, A.297, G.298, T.301, T.302, T.305, V.361, L.365, H.368, P.429, F.430, G.431, A.432, R.435, V.436, C.437, L.438, G.439, A.443 Ligands: AER.2 15 PLIP interactions: 15 interactions with chain A, Hydrophobic interactions: A:A.110, A:I.294, A:A.297, A:V.361, A:L.365, A:F.430, A:L.438 Hydrogen bonds: A:A.110, A:A.432 Salt bridges: A:R.93, A:R.93, A:R.122, A:H.368, A:R.435 Metal complexes: A:C.437 HEM.4: 24 residues within 4Å: Chain B: L.83, R.93, I.109, A.110, W.118, R.122, I.294, A.297, G.298, T.301, T.302, T.305, V.361, L.365, H.368, P.429, F.430, G.431, R.435, C.437, L.438, G.439, A.443 Ligands: AER.5 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:A.110, B:I.294, B:A.297, B:V.361, B:L.365, B:F.430, B:F.430, B:L.438, B:A.443 Salt bridges: B:R.93, B:R.93, B:R.122, B:H.368, B:R.435 Metal complexes: B:C.437

2 x AER: Abiraterone(Non-covalent)

AER.2: 13 residues within 4Å: Chain A: L.102, A.110, Y.198, S.199, I.202, V.203, E.293, G.296, T.301, V.361, S.362, V.478 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.102, A:A.110, A:V.203, A:T.301, A:V.361, A:V.478 Hydrogen bonds: A:S.199 AER.5: 13 residues within 4Å: Chain B: L.102, Y.198, S.199, I.202, V.203, E.293, G.296, T.301, V.361, S.362, V.477, V.478 Ligands: HEM.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.102, B:V.203, B:T.301, B:V.361, B:V.477, B:V.478 Hydrogen bonds: B:S.199

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: F.181, Y.185, Y.198, L.239, F.295 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.181 Hydrogen bonds: A:Y.185, A:Y.198 ACT.7: 3 residues within 4Å: Chain B: S.39, K.56, Y.57 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:K.56 ACT.8: 5 residues within 4Å: Chain B: F.181, Y.185, Y.198, L.239, L.240 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.181, B:L.240 Hydrogen bonds: B:Y.198, B:Y.198 ACT.9: 3 residues within 4Å: Chain B: L.40, M.65, D.209 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:D.209

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain B: R.342 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, E. et al., Inherent steroid 17 alpha ,20-lyase activity in defunct cytochrome P450 17A enzymes. J. Biol. Chem. (2018)

Release Date

2017-12-13

Peptides

Cytochrome P450, family 17, subfamily A, polypeptide 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Cytochrome P450, family 17, subfamily A, polypeptide 1