SMTL ID : 6b88.1 (1 other biounit)

E. coli LepB in complex with GNE0775 ((4S,7S,10S)-10-((S)-4-amino-2-(2-(4-(tert-butyl)phenyl)-4-methylpyrimidine-5-carboxamido)-N-methylbutanamido)-16,26-bis(2-aminoethoxy)-N-(2-iminoethyl)-7-methyl-6,9-dioxo-5,8-diaza-1,2(1,3)-dibenzenacyclodecaphane-4-carboxamide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x CZD: (8S,11S,14S)-14-{[(2S)-4-amino-2-{[2-(4-tert-butylphenyl)-4-methylpyrimidine-5-carbonyl]amino}butanoyl](methyl)amino}-3,18-bis(2-aminoethoxy)-N-[(2Z)-2-iminoethyl]-11-methyl-10,13-dioxo-9,12-diazatricyclo[13.3.1.1~2,6~]icosa-1(19),2(20),3,5,15,17-hexaene-8-carboxamide(Covalent)

CZD.1: 12 residues within 4Å: Chain A: E.6, P.7, F.8, Q.9, P.11, S.14, D.66, Y.67, I.68, K.69, A.203, W.224 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.7, A:F.8, A:P.11, A:Y.67, A:I.68, A:W.224, A:W.224 Hydrogen bonds: A:P.7, A:Q.9, A:Q.9, A:S.12, A:S.12, A:D.66, A:D.66, A:I.68, A:K.69, A:A.203 Water bridges: A:D.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, P.A. et al., Optimized arylomycins are a new class of Gram-negative antibiotics. Nature (2018)

Release Date

2018-10-10

Peptides

Signal peptidase I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Signal peptidase I

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