SMTL ID : 6b90.1

Multiconformer model of apo WT PTP1B with glycerol at 100 K (ALTERNATIVE REFINEMENT OF PDB 1SUG showing conformational heterogeneity)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.46, D.48, V.49, F.182, A.217, I.219, Q.262 Ligands: GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.262, A:Q.262 Water bridges: A:D.48 GOL.2: 8 residues within 4Å: Chain A: S.146, E.147, D.148, V.155, R.156, Q.157, L.172 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.146, A:S.146 Water bridges: A:E.147 GOL.3: 7 residues within 4Å: Chain A: D.48, V.49, I.219, M.258, G.259, Q.262 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.48, A:D.48 Water bridges: A:R.254 GOL.4: 7 residues within 4Å: Chain A: P.89, C.92, A.122, Q.123, Y.124, M.133, F.135 3 PLIP interactions: 3 interactions with chain A Water bridges: A:P.89, A:G.93, A:G.93 GOL.5: 8 residues within 4Å: Chain A: R.105, V.155, L.172, F.174, K.197, E.200, S.201 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.105, A:S.201

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.6: 2 residues within 4Å: Chain A: H.54, F.256 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.54, A:H.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Keedy, D.A. et al., An expanded allosteric network in PTP1B by multitemperature crystallography, fragment screening, and covalent tethering. Elife (2018)

Release Date

2018-06-20

Peptides

Tyrosine-protein phosphatase non-receptor type 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein phosphatase non-receptor type 1

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