SMTL ID : 6b92.1

Crystal Structure of the N-terminal domain of human METTL16 in complex with SAH

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: S.9, K.17 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.9, A:S.9, A:K.17 Water bridges: A:S.9 EDO.2: 2 residues within 4Å: Chain A: R.15, K.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.15, A:R.15 EDO.3: 7 residues within 4Å: Chain A: K.8, S.9, M.10, H.11, T.276, E.277, F.278 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.10, A:T.276 Water bridges: A:A.12 EDO.4: 1 residues within 4Å: Chain A: K.242 No protein-ligand interaction detected (PLIP)

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.5: 19 residues within 4Å: Chain A: L.78, R.85, G.113, T.114, G.115, Y.120, T.135, E.136, V.137, D.138, C.141, V.163, T.167, L.168, N.187, P.188, P.189, F.230, R.233 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:R.85, A:V.137, A:D.138, A:T.167, A:N.187, A:R.233 Water bridges: A:T.114, A:A.116, A:A.116, A:I.119, A:N.187, A:R.233, A:R.233 Salt bridges: A:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruszkowska, A. et al., Structural insights into the RNA methyltransferase domain of METTL16. Sci Rep (2018)

Release Date

2018-04-04

Peptides

U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase

Related Entries With Identical Sequence