SMTL ID : 6b9d.1 (1 other biounit)

Human ATL1 mutant - R77A bound to GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 19 residues within 4Å: Chain A: A.76, F.77, A.78, K.79, G.80, K.81, S.82, F.83, Q.149, R.218, D.219, P.273, V.277, A.278, N.280, P.281, F.283, F.294 Ligands: MG.2 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:A.76, A:A.78, A:K.79, A:G.80, A:K.81, A:S.82, A:F.83, A:Q.149, A:R.218 Water bridges: A:D.219, A:N.280, A:P.281 Salt bridges: A:K.81, A:D.219

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: K.81, S.82, D.147, Q.149 Ligands: GDP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.147, A:D.147

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: M.92, Y.93, N.94, Q.95, I.133 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:M.92, A:Q.95 Water bridges: A:N.134 GOL.4: 8 residues within 4Å: Chain A: A.201, T.205, L.207, K.208, P.209, I.316, N.317, M.409 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.317, A:N.317 GOL.5: 2 residues within 4Å: Chain A: Y.93, N.94 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Donnell, J.P. et al., A hereditary spastic paraplegia-associated atlastin variant exhibits defective allosteric coupling in the catalytic core. J. Biol. Chem. (2018)

Release Date

2017-12-06

Peptides

Atlastin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Atlastin-1

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