SMTL ID : 6ba2.1

Crystal structure of MYST acetyltransferase domain in complex with inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: I.35, D.36 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: C.56, C.59, H.72, C.76 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.56, A:C.59, A:H.72, A:C.76

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 4 residues within 4Å: Chain A: Y.65, E.66, K.67 Ligands: NA.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.66, A:K.67, A:K.67 GOL.4: 5 residues within 4Å: Chain A: Q.247, V.252, K.253, Y.254, H.259 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.247, A:H.259 GOL.5: 6 residues within 4Å: Chain A: R.171, L.202, L.205, S.206, S.209 Ligands: 7KM.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.209 GOL.6: 6 residues within 4Å: Chain A: K.120, T.121, L.122, F.129, C.162, E.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:L.122 GOL.8: 4 residues within 4Å: Chain A: C.59, H.72, C.76, W.78 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.77

1 x NA: SODIUM ION(Non-functional Binders)

NA.7: 2 residues within 4Å: Chain A: K.67 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.67

1 x 7KM: 4-fluoro-5-methyl-N'-(phenylsulfonyl)[1,1'-biphenyl]-3-carbohydrazide(Non-covalent)

7KM.9: 22 residues within 4Å: Chain A: W.38, F.116, L.117, I.163, M.164, I.165, Q.170, R.171, R.172, G.173, Y.174, G.175, R.176, I.179, S.200, L.202, G.203, S.206, Y.207, S.209, Y.210 Ligands: GOL.5 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.38, A:L.117, A:I.163, A:I.165, A:R.176, A:I.179, A:L.202, A:L.202 Hydrogen bonds: A:R.171, A:G.173, A:G.175, A:R.176, A:S.206, A:S.206 Water bridges: A:R.172, A:R.172

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Baell, J.B. et al., Inhibitors of histone acetyltransferases KAT6A/B induce senescence and arrest tumour growth. Nature (2018)

Release Date

2018-08-01

Peptides

Histone acetyltransferase KAT8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone acetyltransferase KAT8

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