SMTL ID : 6bb9.1

The crystal structure of 4-amino-4-deoxychorismate lyase from Salmonella typhimurium LT2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-dimer

Ligands

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 15 residues within 4Å: Chain A: R.48, K.143, E.176, C.178, A.179, A.180, N.181, V.200, G.202, I.203, M.204, N.239, A.240 Chain B: Y.95 Ligands: CL.4 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.203, A:M.204, A:A.240, B:Y.95 Water bridges: A:R.48, A:K.143, A:R.205 Salt bridges: A:R.48, A:K.143 MES.2: 8 residues within 4Å: Chain A: R.93, G.94, Y.95, S.96 Chain B: Y.115, W.119, R.154, A.179 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Y.95, A:S.96, B:R.154 Salt bridges: B:R.154 MES.6: 13 residues within 4Å: Chain A: Y.95 Chain B: R.48, K.143, E.176, A.179, A.180, V.200, G.202, I.203, M.204, N.239, A.240 Ligands: CL.11 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.203, B:M.204, B:A.240 Salt bridges: B:R.48, B:K.143 MES.7: 7 residues within 4Å: Chain A: Y.115, R.154, A.179 Chain B: R.93, G.94, Y.95, S.96 4 PLIP interactions: 1 interactions with chain A, 3 interactions with chain B Salt bridges: A:R.154 Hydrogen bonds: B:R.93, B:Y.95, B:S.96

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: P.137, Y.138 No protein-ligand interaction detected (PLIP) SO4.9: 5 residues within 4Å: Chain B: W.119, G.123, I.124, D.163, R.248 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.163 Salt bridges: B:R.248 SO4.10: 2 residues within 4Å: Chain B: P.137, Y.138 1 PLIP interactions: 1 interactions with chain B Water bridges: B:P.137

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: K.143 Ligands: MES.1 Ligand excluded by PLIP CL.5: 1 residues within 4Å: Chain A: N.201 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain B: K.143 Ligands: MES.6 Ligand excluded by PLIP

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 5 residues within 4Å: Chain B: L.128, S.129, P.130, P.132, L.168 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:P.130 Water bridges: B:L.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of 4-amino-4-deoxychorismate lyase from Salmonella typhimurium LT2. To Be Published

Release Date

2017-10-25

Peptides

4-amino-4-deoxychorismate lyase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

4-amino-4-deoxychorismate lyase