- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-trimer
- Ligands
- 15 x FMT: FORMIC ACID(Non-functional Binders)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.8: 8 residues within 4Å:- Chain A: Y.361, N.391, I.393, D.394, I.397, H.518, P.519, I.520
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Y.361, A:N.391, A:H.518, A:I.520
EDO.9: 5 residues within 4Å:- Chain A: H.70, N.124, Y.159
- Chain B: L.468, K.471
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:N.124, B:K.471
EDO.10: 3 residues within 4Å:- Chain A: V.166, E.167, D.168
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:D.168
EDO.11: 7 residues within 4Å:- Chain A: T.492
- Chain B: R.20
- Chain C: P.31, T.32, L.33, Y.34
- Ligands: FMT.5
3 PLIP interactions:2 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:T.32, C:Y.34, B:R.20
EDO.12: 5 residues within 4Å:- Chain A: P.90, Y.275, Y.285, D.427, F.435
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Y.275, A:F.435
EDO.13: 5 residues within 4Å:- Chain A: E.446, R.448, S.506, V.507, R.508
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.446, A:R.448
EDO.17: 8 residues within 4Å:- Chain B: Y.361, K.366, N.391, I.393, D.394, I.397, H.518, I.520
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:K.366, B:K.366, B:N.391, B:H.518, B:I.520
EDO.18: 5 residues within 4Å:- Chain B: N.123, N.124, T.125, I.126
- Chain C: K.471
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.125
EDO.25: 8 residues within 4Å:- Chain C: Y.361, N.391, I.393, D.394, I.397, H.518, P.519, I.520
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.391, C:H.518, C:I.520
EDO.26: 2 residues within 4Å:- Chain A: L.469
- Chain C: D.168
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:D.168
- 1 x RFP: RIFAMPICIN(Non-covalent)
RFP.19: 14 residues within 4Å:- Chain A: Q.29, E.167, P.485, F.488, F.489
- Chain B: V.26, F.488
- Chain C: V.26, D.27, Q.29, F.170, F.488
- Ligands: FMT.1, FMT.15
15 PLIP interactions:9 interactions with chain A, 3 interactions with chain C, 3 interactions with chain B- Hydrophobic interactions: A:P.485, A:P.485, A:F.488, A:F.488, A:F.488, A:F.489, C:F.170, C:F.170, C:F.488, B:V.26, B:F.488, B:F.488
- Hydrogen bonds: A:Q.29
- Water bridges: A:E.167, A:E.167
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garriga, D. et al., Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-07-18
- Peptides
- Scaffold protein D13: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.75 Å
- Oligo State
- homo-trimer
- Ligands
- 15 x FMT: FORMIC ACID(Non-functional Binders)
- 10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x RFP: RIFAMPICIN(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Garriga, D. et al., Structural basis for the inhibition of poxvirus assembly by the antibiotic rifampicin. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-07-18
- Peptides
- Scaffold protein D13: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
C